Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0889 and hom overlap by 4 nucleotides hom and DVU0891 are separated by 1 nucleotides
DVU0889: DVU0889 - phosphonopyruvate decarboxylase-related protein (TIGR), at 979,998 to 981,137
DVU0889
DVU0890: hom - homoserine dehydrogenase (TIGR), at 981,134 to 982,408
hom
DVU0891: DVU0891 - aminotransferase, classes I and II (TIGR), at 982,410 to 983,603
DVU0891
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 980.145 kb on - strand, within DVU0889 at 980.179 kb on + strand, within DVU0889 at 980.202 kb on - strand, within DVU0889 at 980.299 kb on - strand, within DVU0889 at 980.330 kb on - strand, within DVU0889 at 980.340 kb on + strand, within DVU0889 at 980.348 kb on - strand, within DVU0889 at 980.429 kb on + strand, within DVU0889 at 980.431 kb on - strand, within DVU0889 at 980.437 kb on - strand, within DVU0889 at 980.463 kb on - strand, within DVU0889 at 980.512 kb on - strand, within DVU0889 at 980.524 kb on + strand, within DVU0889 at 980.524 kb on + strand, within DVU0889 at 980.577 kb on - strand, within DVU0889 at 980.592 kb on + strand, within DVU0889 at 980.613 kb on + strand, within DVU0889 at 980.705 kb on + strand, within DVU0889 at 980.731 kb on + strand, within DVU0889 at 980.731 kb on + strand, within DVU0889 at 980.738 kb on - strand, within DVU0889 at 980.739 kb on - strand, within DVU0889 at 980.915 kb on + strand, within DVU0889 at 980.980 kb on + strand, within DVU0889 at 980.980 kb on + strand, within DVU0889 at 980.988 kb on - strand, within DVU0889 at 981.019 kb on - strand, within DVU0889 at 981.039 kb on - strand at 981.362 kb on + strand, within hom at 982.009 kb on - strand, within hom at 982.425 kb on - strand at 982.482 kb on + strand at 982.579 kb on - strand, within DVU0891 at 982.754 kb on - strand, within DVU0891 at 982.759 kb on - strand, within DVU0891 at 982.806 kb on - strand, within DVU0891 at 982.822 kb on - strand, within DVU0891 at 982.867 kb on - strand, within DVU0891 at 982.890 kb on - strand, within DVU0891 at 982.942 kb on - strand, within DVU0891 at 983.389 kb on - strand, within DVU0891
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 980,145 - DVU0889 0.13 -1.0 980,179 + DVU0889 0.16 -1.1 980,202 - DVU0889 0.18 +0.3 980,299 - DVU0889 0.26 +4.7 980,330 - DVU0889 0.29 -1.6 980,340 + DVU0889 0.30 +0.6 980,348 - DVU0889 0.31 -3.0 980,429 + DVU0889 0.38 +0.5 980,431 - DVU0889 0.38 +2.7 980,437 - DVU0889 0.39 -0.4 980,463 - DVU0889 0.41 +2.1 980,512 - DVU0889 0.45 +1.5 980,524 + DVU0889 0.46 +0.6 980,524 + DVU0889 0.46 +1.4 980,577 - DVU0889 0.51 -1.6 980,592 + DVU0889 0.52 +0.9 980,613 + DVU0889 0.54 +0.6 980,705 + DVU0889 0.62 -1.5 980,731 + DVU0889 0.64 +2.4 980,731 + DVU0889 0.64 -1.5 980,738 - DVU0889 0.65 +4.1 980,739 - DVU0889 0.65 -1.6 980,915 + DVU0889 0.80 +1.7 980,980 + DVU0889 0.86 +1.3 980,980 + DVU0889 0.86 -1.4 980,988 - DVU0889 0.87 -1.3 981,019 - DVU0889 0.90 +0.6 981,039 - -1.3 981,362 + hom DVU0890 0.18 +1.6 982,009 - hom DVU0890 0.69 +2.4 982,425 - -0.5 982,482 + -0.7 982,579 - DVU0891 0.14 -0.4 982,754 - DVU0891 0.29 -2.0 982,759 - DVU0891 0.29 -2.0 982,806 - DVU0891 0.33 +2.1 982,822 - DVU0891 0.35 +3.1 982,867 - DVU0891 0.38 +3.7 982,890 - DVU0891 0.40 +1.6 982,942 - DVU0891 0.45 -1.7 983,389 - DVU0891 0.82 +0.3
Or see this region's nucleotide sequence