Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF15105

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2029 and DVU2030 overlap by 4 nucleotidesDVU2030 and DORF15105 overlap by 38 nucleotidesDORF15105 and DVU2032 are separated by 480 nucleotides DVU2029: DVU2029 - ISDvu2, transposase OrfA (TIGR), at 2,111,440 to 2,111,838 DVU2029 DVU2030: DVU2030 - ISDvu2, transposase OrfB (TIGR), at 2,111,835 to 2,112,677 DVU2030 DORF15105: DORF15105 - no description, at 2,112,640 to 2,113,482 DORF15105 DVU2032: DVU2032 - ERF family protein (TIGR), at 2,113,963 to 2,114,676 DVU2032 Position (kb) 2112 2113 2114Strain fitness (log2 ratio) -1 0 1 2at 2112.848 kb on - strand, within DORF15105at 2112.898 kb on - strand, within DORF15105at 2113.049 kb on - strand, within DORF15105at 2113.142 kb on - strand, within DORF15105at 2113.339 kb on - strand, within DORF15105at 2113.471 kb on - strandat 2113.591 kb on + strandat 2113.605 kb on + strandat 2113.709 kb on - strandat 2113.711 kb on + strandat 2113.719 kb on - strandat 2113.781 kb on + strandat 2113.781 kb on + strandat 2113.789 kb on - strandat 2113.789 kb on - strandat 2113.801 kb on + strandat 2113.970 kb on + strandat 2113.980 kb on - strandat 2113.980 kb on - strandat 2113.985 kb on + strandat 2113.985 kb on + strandat 2113.993 kb on - strandat 2113.993 kb on - strandat 2114.055 kb on - strand, within DVU2032at 2114.130 kb on + strand, within DVU2032at 2114.150 kb on + strand, within DVU2032at 2114.216 kb on - strand, within DVU2032at 2114.249 kb on - strand, within DVU2032at 2114.258 kb on + strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.298 kb on - strand, within DVU2032at 2114.340 kb on + strand, within DVU2032at 2114.403 kb on + strand, within DVU2032at 2114.472 kb on - strand, within DVU2032

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,112,848 - DORF15105 0.25 -0.8
2,112,898 - DORF15105 0.31 -1.3
2,113,049 - DORF15105 0.49 -0.7
2,113,142 - DORF15105 0.60 -1.4
2,113,339 - DORF15105 0.83 -0.8
2,113,471 - -0.3
2,113,591 + -1.1
2,113,605 + +1.5
2,113,709 - +1.4
2,113,711 + -1.3
2,113,719 - -1.6
2,113,781 + +1.8
2,113,781 + +0.0
2,113,789 - +1.2
2,113,789 - -0.9
2,113,801 + -1.3
2,113,970 + +0.7
2,113,980 - +1.4
2,113,980 - -0.1
2,113,985 + +1.5
2,113,985 + +1.2
2,113,993 - -0.1
2,113,993 - +1.1
2,114,055 - DVU2032 0.13 -0.7
2,114,130 + DVU2032 0.23 +0.2
2,114,150 + DVU2032 0.26 +1.6
2,114,216 - DVU2032 0.35 +2.2
2,114,249 - DVU2032 0.40 +0.9
2,114,258 + DVU2032 0.41 +1.8
2,114,261 - DVU2032 0.42 +0.7
2,114,261 - DVU2032 0.42 +0.2
2,114,261 - DVU2032 0.42 -0.9
2,114,261 - DVU2032 0.42 -1.7
2,114,261 - DVU2032 0.42 -1.1
2,114,261 - DVU2032 0.42 +0.0
2,114,298 - DVU2032 0.47 -1.7
2,114,340 + DVU2032 0.53 +0.4
2,114,403 + DVU2032 0.62 +0.9
2,114,472 - DVU2032 0.71 +1.4

Or see this region's nucleotide sequence