Experiment: Time0 for outgrown library 2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0956 and cobO are separated by 3 nucleotides cobO and purN are separated by 6 nucleotides purN and obgE are separated by 174 nucleotides
Synpcc7942_0956: Synpcc7942_0956 - hypothetical protein, at 963,926 to 965,068
_0956
Synpcc7942_0957: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 965,072 to 965,719
cobO
Synpcc7942_0958: purN - phosphoribosylglycinamide formyltransferase, at 965,726 to 966,355
purN
Synpcc7942_0959: obgE - GTPase ObgE, at 966,530 to 967,561
obgE
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 964.758 kb on + strand, within Synpcc7942_0956 at 964.766 kb on - strand, within Synpcc7942_0956 at 964.931 kb on - strand, within Synpcc7942_0956 at 964.947 kb on + strand, within Synpcc7942_0956 at 965.021 kb on + strand at 965.040 kb on - strand at 965.042 kb on + strand at 965.042 kb on + strand at 965.045 kb on - strand at 965.055 kb on + strand at 965.062 kb on - strand at 965.751 kb on + strand at 965.778 kb on + strand at 965.780 kb on - strand at 965.822 kb on - strand, within purN at 965.882 kb on + strand, within purN at 965.901 kb on + strand, within purN at 965.912 kb on + strand, within purN at 965.913 kb on + strand, within purN at 965.955 kb on + strand at 965.964 kb on - strand, within purN at 965.969 kb on - strand, within purN at 965.981 kb on - strand, within purN at 966.008 kb on + strand, within purN at 966.024 kb on + strand, within purN at 966.101 kb on + strand, within purN at 966.101 kb on + strand, within purN at 966.109 kb on - strand, within purN at 966.143 kb on - strand, within purN at 966.176 kb on - strand at 966.197 kb on + strand, within purN at 966.237 kb on + strand, within purN at 966.245 kb on - strand, within purN at 966.250 kb on + strand, within purN at 966.258 kb on - strand, within purN at 966.284 kb on + strand at 966.284 kb on + strand, within purN at 966.284 kb on + strand, within purN at 966.292 kb on + strand, within purN at 966.292 kb on + strand, within purN at 966.292 kb on - strand, within purN at 966.300 kb on - strand at 966.300 kb on - strand at 966.300 kb on - strand at 966.300 kb on - strand at 966.329 kb on - strand at 966.336 kb on + strand at 966.337 kb on - strand at 966.373 kb on - strand at 966.384 kb on + strand at 966.384 kb on + strand at 966.392 kb on - strand at 966.422 kb on + strand at 966.430 kb on - strand at 966.471 kb on - strand at 966.487 kb on + strand at 966.495 kb on - strand at 966.495 kb on - strand at 966.505 kb on - strand at 966.505 kb on - strand at 966.505 kb on - strand at 966.506 kb on - strand at 966.541 kb on - strand at 966.587 kb on + strand at 966.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0 for outgrown library 2.0 remove 964,758 + Synpcc7942_0956 0.73 -2.5 964,766 - Synpcc7942_0956 0.73 +0.8 964,931 - Synpcc7942_0956 0.88 -0.6 964,947 + Synpcc7942_0956 0.89 +0.2 965,021 + -3.0 965,040 - -1.4 965,042 + +0.6 965,042 + -0.3 965,045 - +0.9 965,055 + -0.3 965,062 - -2.2 965,751 + +2.7 965,778 + -2.5 965,780 - -1.0 965,822 - purN Synpcc7942_0958 0.15 -2.0 965,882 + purN Synpcc7942_0958 0.25 -0.0 965,901 + purN Synpcc7942_0958 0.28 -0.8 965,912 + purN Synpcc7942_0958 0.30 -1.2 965,913 + purN Synpcc7942_0958 0.30 -1.4 965,955 + -1.0 965,964 - purN Synpcc7942_0958 0.38 -1.9 965,969 - purN Synpcc7942_0958 0.39 -0.2 965,981 - purN Synpcc7942_0958 0.40 -1.2 966,008 + purN Synpcc7942_0958 0.45 -1.6 966,024 + purN Synpcc7942_0958 0.47 +0.8 966,101 + purN Synpcc7942_0958 0.60 -0.5 966,101 + purN Synpcc7942_0958 0.60 -0.7 966,109 - purN Synpcc7942_0958 0.61 -2.6 966,143 - purN Synpcc7942_0958 0.66 -1.1 966,176 - -0.9 966,197 + purN Synpcc7942_0958 0.75 -0.5 966,237 + purN Synpcc7942_0958 0.81 -1.6 966,245 - purN Synpcc7942_0958 0.82 -1.3 966,250 + purN Synpcc7942_0958 0.83 -1.0 966,258 - purN Synpcc7942_0958 0.84 -2.7 966,284 + +0.0 966,284 + purN Synpcc7942_0958 0.89 -2.3 966,284 + purN Synpcc7942_0958 0.89 -1.2 966,292 + purN Synpcc7942_0958 0.90 -0.6 966,292 + purN Synpcc7942_0958 0.90 -3.6 966,292 - purN Synpcc7942_0958 0.90 -1.5 966,300 - -0.1 966,300 - +0.4 966,300 - -1.6 966,300 - -2.1 966,329 - +0.6 966,336 + +0.4 966,337 - -1.5 966,373 - -2.3 966,384 + -2.6 966,384 + -0.6 966,392 - +0.6 966,422 + -1.0 966,430 - -0.5 966,471 - -2.0 966,487 + +2.3 966,495 - -3.5 966,495 - -1.6 966,505 - +0.5 966,505 - -0.2 966,505 - -1.2 966,506 - -0.7 966,541 - +0.1 966,587 + -0.3 966,587 + -0.8
Or see this region's nucleotide sequence