Experiment: Time0 for outgrown library 2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhnB and Synpcc7942_0880 are separated by 22 nucleotides Synpcc7942_0880 and pheA are separated by 79 nucleotides pheA and lon are separated by 12 nucleotides lon and rpsJ are separated by 209 nucleotides
Synpcc7942_0879: rhnB - RNase HII, at 886,245 to 886,892
rhnB
Synpcc7942_0880: Synpcc7942_0880 - hypothetical protein, at 886,915 to 887,472
_0880
Synpcc7942_0881: pheA - prephenate dehydratase, at 887,552 to 888,427
pheA
Synpcc7942_0882: lon - Peptidase S16, lon-like, at 888,440 to 889,096
lon
Synpcc7942_0883: rpsJ - 30S ribosomal protein S10, at 889,306 to 889,623
rpsJ
Position (kb) 887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 886.576 kb on - strand, within rhnB at 886.591 kb on - strand, within rhnB at 886.591 kb on - strand, within rhnB at 886.660 kb on - strand, within rhnB at 886.714 kb on - strand, within rhnB at 886.714 kb on - strand, within rhnB at 886.777 kb on - strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.794 kb on - strand, within rhnB at 886.796 kb on - strand, within rhnB at 886.835 kb on - strand at 886.838 kb on + strand at 886.881 kb on + strand at 886.886 kb on + strand at 886.886 kb on + strand at 886.889 kb on - strand at 886.889 kb on - strand at 886.946 kb on + strand at 887.024 kb on + strand, within Synpcc7942_0880 at 887.024 kb on + strand, within Synpcc7942_0880 at 887.024 kb on + strand, within Synpcc7942_0880 at 887.032 kb on - strand at 887.032 kb on - strand, within Synpcc7942_0880 at 887.032 kb on - strand, within Synpcc7942_0880 at 887.042 kb on - strand, within Synpcc7942_0880 at 887.048 kb on + strand, within Synpcc7942_0880 at 887.090 kb on + strand, within Synpcc7942_0880 at 887.117 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on - strand, within Synpcc7942_0880 at 887.191 kb on - strand, within Synpcc7942_0880 at 887.262 kb on + strand, within Synpcc7942_0880 at 887.303 kb on - strand, within Synpcc7942_0880 at 887.332 kb on + strand, within Synpcc7942_0880 at 887.332 kb on + strand, within Synpcc7942_0880 at 887.354 kb on + strand, within Synpcc7942_0880 at 887.356 kb on + strand, within Synpcc7942_0880 at 887.356 kb on + strand, within Synpcc7942_0880 at 887.356 kb on + strand, within Synpcc7942_0880 at 887.362 kb on - strand, within Synpcc7942_0880 at 887.362 kb on - strand, within Synpcc7942_0880 at 887.393 kb on + strand, within Synpcc7942_0880 at 887.396 kb on - strand, within Synpcc7942_0880 at 887.406 kb on - strand, within Synpcc7942_0880 at 887.540 kb on - strand at 887.542 kb on + strand at 887.556 kb on - strand at 887.556 kb on - strand at 888.387 kb on + strand at 888.387 kb on + strand at 888.395 kb on - strand at 888.395 kb on - strand at 888.395 kb on - strand at 888.445 kb on - strand at 888.591 kb on + strand, within lon at 888.591 kb on + strand, within lon at 888.612 kb on + strand, within lon at 888.614 kb on + strand, within lon at 888.625 kb on + strand, within lon at 888.626 kb on - strand, within lon at 888.681 kb on + strand, within lon at 888.701 kb on + strand, within lon at 888.711 kb on + strand, within lon at 888.714 kb on - strand, within lon at 888.719 kb on - strand, within lon at 888.721 kb on - strand, within lon at 888.731 kb on + strand, within lon at 888.760 kb on + strand, within lon at 888.772 kb on + strand, within lon at 888.780 kb on - strand, within lon at 888.835 kb on - strand, within lon at 888.889 kb on - strand, within lon at 888.902 kb on - strand, within lon at 888.912 kb on + strand, within lon at 888.982 kb on + strand at 889.031 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.120 kb on - strand at 889.120 kb on - strand at 889.134 kb on + strand at 889.144 kb on + strand at 889.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0 for outgrown library 2.0 remove 886,576 - rhnB Synpcc7942_0879 0.51 +0.2 886,591 - rhnB Synpcc7942_0879 0.53 -0.3 886,591 - rhnB Synpcc7942_0879 0.53 +0.2 886,660 - rhnB Synpcc7942_0879 0.64 +1.0 886,714 - rhnB Synpcc7942_0879 0.72 +0.2 886,714 - rhnB Synpcc7942_0879 0.72 -0.3 886,777 - rhnB Synpcc7942_0879 0.82 -2.2 886,788 + rhnB Synpcc7942_0879 0.84 -0.7 886,788 + rhnB Synpcc7942_0879 0.84 +0.8 886,788 + rhnB Synpcc7942_0879 0.84 -3.1 886,794 - rhnB Synpcc7942_0879 0.85 -0.5 886,796 - rhnB Synpcc7942_0879 0.85 +0.8 886,835 - +1.0 886,838 + +2.3 886,881 + +1.2 886,886 + +0.8 886,886 + +1.9 886,889 - -0.2 886,889 - -0.4 886,946 + +1.8 887,024 + Synpcc7942_0880 0.20 -0.9 887,024 + Synpcc7942_0880 0.20 +0.1 887,024 + Synpcc7942_0880 0.20 +2.0 887,032 - -1.7 887,032 - Synpcc7942_0880 0.21 +2.2 887,032 - Synpcc7942_0880 0.21 +0.0 887,042 - Synpcc7942_0880 0.23 +2.1 887,048 + Synpcc7942_0880 0.24 -0.4 887,090 + Synpcc7942_0880 0.31 -0.6 887,117 + Synpcc7942_0880 0.36 +2.6 887,123 + Synpcc7942_0880 0.37 +1.7 887,123 + Synpcc7942_0880 0.37 +2.8 887,123 + Synpcc7942_0880 0.37 +2.0 887,123 - Synpcc7942_0880 0.37 +3.0 887,191 - Synpcc7942_0880 0.49 -2.2 887,262 + Synpcc7942_0880 0.62 +1.8 887,303 - Synpcc7942_0880 0.70 +1.8 887,332 + Synpcc7942_0880 0.75 +2.4 887,332 + Synpcc7942_0880 0.75 +2.5 887,354 + Synpcc7942_0880 0.79 +1.3 887,356 + Synpcc7942_0880 0.79 -0.7 887,356 + Synpcc7942_0880 0.79 -0.2 887,356 + Synpcc7942_0880 0.79 +1.8 887,362 - Synpcc7942_0880 0.80 +2.8 887,362 - Synpcc7942_0880 0.80 +1.5 887,393 + Synpcc7942_0880 0.86 +1.7 887,396 - Synpcc7942_0880 0.86 -3.6 887,406 - Synpcc7942_0880 0.88 +3.1 887,540 - -3.2 887,542 + -0.2 887,556 - +1.7 887,556 - -1.5 888,387 + +0.6 888,387 + -1.5 888,395 - -0.9 888,395 - +0.5 888,395 - +1.3 888,445 - +1.2 888,591 + lon Synpcc7942_0882 0.23 -0.6 888,591 + lon Synpcc7942_0882 0.23 -0.4 888,612 + lon Synpcc7942_0882 0.26 -0.0 888,614 + lon Synpcc7942_0882 0.26 +2.0 888,625 + lon Synpcc7942_0882 0.28 -0.3 888,626 - lon Synpcc7942_0882 0.28 +1.3 888,681 + lon Synpcc7942_0882 0.37 +0.4 888,701 + lon Synpcc7942_0882 0.40 -1.6 888,711 + lon Synpcc7942_0882 0.41 +1.4 888,714 - lon Synpcc7942_0882 0.42 -0.5 888,719 - lon Synpcc7942_0882 0.42 -0.5 888,721 - lon Synpcc7942_0882 0.43 +0.3 888,731 + lon Synpcc7942_0882 0.44 +0.8 888,760 + lon Synpcc7942_0882 0.49 +1.7 888,772 + lon Synpcc7942_0882 0.51 -2.2 888,780 - lon Synpcc7942_0882 0.52 +2.2 888,835 - lon Synpcc7942_0882 0.60 +0.6 888,889 - lon Synpcc7942_0882 0.68 +2.4 888,902 - lon Synpcc7942_0882 0.70 +2.5 888,912 + lon Synpcc7942_0882 0.72 -1.9 888,982 + +1.3 889,031 + +0.2 889,112 + +0.0 889,112 + -2.0 889,112 + +1.2 889,112 + +1.8 889,112 + +0.5 889,120 - +2.0 889,120 - -0.4 889,134 + +1.9 889,144 + -0.4 889,152 - +1.7
Or see this region's nucleotide sequence