Experiment: Time0 for outgrown library 2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nha1 and Synpcc7942_0812 are separated by 123 nucleotides Synpcc7942_0812 and hisS are separated by 25 nucleotides
Synpcc7942_0811: nha1 - Na+/H+ antiporter, at 805,186 to 806,769
nha1
Synpcc7942_0812: Synpcc7942_0812 - Heat shock protein DnaJ-like, at 806,893 to 807,813
_0812
Synpcc7942_0813: hisS - ATP phosphoribosyltransferase regulatory subunit, at 807,839 to 809,101
hisS
Position (kb) 806
807
808 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 805.898 kb on + strand, within nha1 at 805.901 kb on + strand, within nha1 at 805.936 kb on - strand, within nha1 at 806.006 kb on + strand, within nha1 at 806.015 kb on + strand, within nha1 at 806.025 kb on + strand, within nha1 at 806.078 kb on + strand, within nha1 at 806.086 kb on - strand, within nha1 at 806.089 kb on + strand, within nha1 at 806.089 kb on + strand, within nha1 at 806.089 kb on + strand, within nha1 at 806.097 kb on - strand, within nha1 at 806.097 kb on - strand, within nha1 at 806.097 kb on - strand, within nha1 at 806.097 kb on - strand, within nha1 at 806.099 kb on + strand, within nha1 at 806.099 kb on + strand, within nha1 at 806.099 kb on - strand, within nha1 at 806.107 kb on - strand, within nha1 at 806.111 kb on + strand, within nha1 at 806.111 kb on + strand, within nha1 at 806.111 kb on + strand, within nha1 at 806.119 kb on - strand, within nha1 at 806.121 kb on - strand, within nha1 at 806.126 kb on + strand, within nha1 at 806.152 kb on + strand, within nha1 at 806.161 kb on + strand, within nha1 at 806.169 kb on - strand, within nha1 at 806.169 kb on - strand, within nha1 at 806.176 kb on - strand, within nha1 at 806.181 kb on - strand, within nha1 at 806.214 kb on + strand, within nha1 at 806.235 kb on + strand, within nha1 at 806.238 kb on - strand, within nha1 at 806.263 kb on + strand at 806.270 kb on - strand, within nha1 at 806.273 kb on + strand, within nha1 at 806.273 kb on + strand, within nha1 at 806.281 kb on - strand, within nha1 at 806.281 kb on - strand, within nha1 at 806.281 kb on - strand, within nha1 at 806.281 kb on - strand, within nha1 at 806.281 kb on - strand, within nha1 at 806.288 kb on + strand, within nha1 at 806.291 kb on - strand, within nha1 at 806.296 kb on + strand, within nha1 at 806.304 kb on - strand, within nha1 at 806.331 kb on + strand, within nha1 at 806.331 kb on + strand, within nha1 at 806.341 kb on + strand, within nha1 at 806.343 kb on + strand, within nha1 at 806.344 kb on + strand, within nha1 at 806.346 kb on + strand, within nha1 at 806.349 kb on - strand, within nha1 at 806.349 kb on - strand, within nha1 at 806.353 kb on + strand, within nha1 at 806.361 kb on - strand, within nha1 at 806.368 kb on - strand, within nha1 at 806.378 kb on + strand, within nha1 at 806.378 kb on + strand, within nha1 at 806.385 kb on + strand, within nha1 at 806.387 kb on + strand, within nha1 at 806.388 kb on - strand, within nha1 at 806.393 kb on - strand, within nha1 at 806.398 kb on + strand, within nha1 at 806.399 kb on + strand, within nha1 at 806.400 kb on - strand, within nha1 at 806.400 kb on - strand, within nha1 at 806.416 kb on + strand, within nha1 at 806.419 kb on - strand, within nha1 at 806.440 kb on - strand, within nha1 at 806.458 kb on + strand, within nha1 at 806.466 kb on - strand, within nha1 at 806.466 kb on - strand, within nha1 at 806.466 kb on - strand, within nha1 at 806.466 kb on - strand, within nha1 at 806.480 kb on + strand, within nha1 at 806.480 kb on + strand, within nha1 at 806.485 kb on + strand, within nha1 at 806.488 kb on - strand, within nha1 at 806.488 kb on - strand, within nha1 at 806.488 kb on - strand, within nha1 at 806.488 kb on - strand, within nha1 at 806.488 kb on - strand, within nha1 at 806.488 kb on - strand, within nha1 at 806.493 kb on - strand, within nha1 at 806.520 kb on + strand, within nha1 at 806.552 kb on - strand, within nha1 at 806.556 kb on + strand at 806.564 kb on - strand, within nha1 at 806.564 kb on - strand, within nha1 at 806.567 kb on - strand, within nha1 at 806.572 kb on - strand, within nha1 at 806.584 kb on - strand, within nha1 at 806.589 kb on - strand, within nha1 at 806.631 kb on - strand at 806.652 kb on - strand at 806.652 kb on - strand at 806.684 kb on + strand at 806.689 kb on + strand at 806.692 kb on - strand at 806.719 kb on - strand at 806.733 kb on + strand at 806.733 kb on + strand at 806.743 kb on + strand at 806.803 kb on + strand at 806.803 kb on + strand at 806.806 kb on + strand at 806.808 kb on + strand at 806.816 kb on - strand at 806.818 kb on + strand at 806.821 kb on - strand at 806.821 kb on - strand at 806.827 kb on + strand at 806.830 kb on + strand at 806.855 kb on - strand at 806.896 kb on - strand at 806.927 kb on - strand at 806.927 kb on - strand at 806.927 kb on - strand at 806.951 kb on - strand at 806.961 kb on - strand at 806.973 kb on + strand at 807.021 kb on + strand, within Synpcc7942_0812 at 807.021 kb on + strand, within Synpcc7942_0812 at 807.021 kb on + strand, within Synpcc7942_0812 at 807.028 kb on - strand, within Synpcc7942_0812 at 807.029 kb on - strand, within Synpcc7942_0812 at 807.068 kb on + strand, within Synpcc7942_0812 at 807.075 kb on - strand, within Synpcc7942_0812 at 807.134 kb on + strand, within Synpcc7942_0812 at 807.213 kb on - strand, within Synpcc7942_0812 at 807.217 kb on + strand, within Synpcc7942_0812 at 807.217 kb on + strand, within Synpcc7942_0812 at 807.268 kb on + strand, within Synpcc7942_0812 at 807.291 kb on + strand, within Synpcc7942_0812 at 807.294 kb on - strand, within Synpcc7942_0812 at 807.299 kb on - strand, within Synpcc7942_0812 at 807.319 kb on + strand, within Synpcc7942_0812 at 807.323 kb on + strand at 807.337 kb on + strand, within Synpcc7942_0812 at 807.352 kb on - strand, within Synpcc7942_0812 at 807.355 kb on + strand at 807.360 kb on + strand, within Synpcc7942_0812 at 807.373 kb on - strand, within Synpcc7942_0812 at 807.383 kb on - strand, within Synpcc7942_0812 at 807.398 kb on + strand, within Synpcc7942_0812 at 807.399 kb on + strand, within Synpcc7942_0812 at 807.399 kb on + strand, within Synpcc7942_0812 at 807.399 kb on + strand, within Synpcc7942_0812 at 807.404 kb on + strand, within Synpcc7942_0812 at 807.406 kb on - strand at 807.406 kb on - strand, within Synpcc7942_0812 at 807.407 kb on - strand, within Synpcc7942_0812 at 807.410 kb on + strand, within Synpcc7942_0812 at 807.416 kb on - strand, within Synpcc7942_0812 at 807.418 kb on - strand at 807.433 kb on + strand, within Synpcc7942_0812 at 807.439 kb on + strand, within Synpcc7942_0812 at 807.477 kb on + strand, within Synpcc7942_0812 at 807.482 kb on + strand, within Synpcc7942_0812 at 807.485 kb on - strand, within Synpcc7942_0812 at 807.490 kb on - strand, within Synpcc7942_0812 at 807.500 kb on - strand, within Synpcc7942_0812 at 807.512 kb on + strand, within Synpcc7942_0812 at 807.512 kb on + strand, within Synpcc7942_0812 at 807.512 kb on + strand, within Synpcc7942_0812 at 807.514 kb on + strand, within Synpcc7942_0812 at 807.522 kb on + strand, within Synpcc7942_0812 at 807.522 kb on - strand at 807.561 kb on + strand, within Synpcc7942_0812 at 807.602 kb on + strand, within Synpcc7942_0812 at 807.607 kb on + strand, within Synpcc7942_0812 at 807.610 kb on + strand, within Synpcc7942_0812 at 807.610 kb on - strand, within Synpcc7942_0812 at 807.738 kb on + strand at 807.746 kb on - strand at 807.746 kb on - strand at 807.746 kb on - strand at 807.746 kb on - strand at 807.770 kb on - strand at 807.770 kb on - strand at 807.773 kb on + strand at 807.773 kb on + strand at 807.781 kb on - strand at 807.781 kb on - strand at 807.791 kb on - strand at 807.804 kb on + strand at 807.827 kb on - strand at 807.829 kb on + strand at 807.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0 for outgrown library 2.0 remove 805,898 + nha1 Synpcc7942_0811 0.45 -0.6 805,901 + nha1 Synpcc7942_0811 0.45 -0.1 805,936 - nha1 Synpcc7942_0811 0.47 -0.9 806,006 + nha1 Synpcc7942_0811 0.52 +0.1 806,015 + nha1 Synpcc7942_0811 0.52 +0.9 806,025 + nha1 Synpcc7942_0811 0.53 -2.9 806,078 + nha1 Synpcc7942_0811 0.56 -1.2 806,086 - nha1 Synpcc7942_0811 0.57 -2.5 806,089 + nha1 Synpcc7942_0811 0.57 -1.3 806,089 + nha1 Synpcc7942_0811 0.57 -1.2 806,089 + nha1 Synpcc7942_0811 0.57 -1.3 806,097 - nha1 Synpcc7942_0811 0.58 +0.6 806,097 - nha1 Synpcc7942_0811 0.58 -1.5 806,097 - nha1 Synpcc7942_0811 0.58 -2.7 806,097 - nha1 Synpcc7942_0811 0.58 -0.5 806,099 + nha1 Synpcc7942_0811 0.58 +2.0 806,099 + nha1 Synpcc7942_0811 0.58 -0.7 806,099 - nha1 Synpcc7942_0811 0.58 +0.2 806,107 - nha1 Synpcc7942_0811 0.58 -0.9 806,111 + nha1 Synpcc7942_0811 0.58 +1.2 806,111 + nha1 Synpcc7942_0811 0.58 -1.4 806,111 + nha1 Synpcc7942_0811 0.58 -2.1 806,119 - nha1 Synpcc7942_0811 0.59 +0.2 806,121 - nha1 Synpcc7942_0811 0.59 -0.8 806,126 + nha1 Synpcc7942_0811 0.59 +1.5 806,152 + nha1 Synpcc7942_0811 0.61 -0.3 806,161 + nha1 Synpcc7942_0811 0.62 -1.5 806,169 - nha1 Synpcc7942_0811 0.62 +1.4 806,169 - nha1 Synpcc7942_0811 0.62 -1.6 806,176 - nha1 Synpcc7942_0811 0.62 -3.7 806,181 - nha1 Synpcc7942_0811 0.63 -1.9 806,214 + nha1 Synpcc7942_0811 0.65 -3.9 806,235 + nha1 Synpcc7942_0811 0.66 -0.4 806,238 - nha1 Synpcc7942_0811 0.66 +0.8 806,263 + +0.5 806,270 - nha1 Synpcc7942_0811 0.68 -1.8 806,273 + nha1 Synpcc7942_0811 0.69 -0.9 806,273 + nha1 Synpcc7942_0811 0.69 -1.6 806,281 - nha1 Synpcc7942_0811 0.69 -0.8 806,281 - nha1 Synpcc7942_0811 0.69 +2.8 806,281 - nha1 Synpcc7942_0811 0.69 -0.1 806,281 - nha1 Synpcc7942_0811 0.69 +1.3 806,281 - nha1 Synpcc7942_0811 0.69 +0.9 806,288 + nha1 Synpcc7942_0811 0.70 +1.1 806,291 - nha1 Synpcc7942_0811 0.70 -0.8 806,296 + nha1 Synpcc7942_0811 0.70 +1.1 806,304 - nha1 Synpcc7942_0811 0.71 +0.6 806,331 + nha1 Synpcc7942_0811 0.72 -0.5 806,331 + nha1 Synpcc7942_0811 0.72 +0.8 806,341 + nha1 Synpcc7942_0811 0.73 +1.0 806,343 + nha1 Synpcc7942_0811 0.73 +0.1 806,344 + nha1 Synpcc7942_0811 0.73 +1.6 806,346 + nha1 Synpcc7942_0811 0.73 -2.0 806,349 - nha1 Synpcc7942_0811 0.73 -0.6 806,349 - nha1 Synpcc7942_0811 0.73 -0.6 806,353 + nha1 Synpcc7942_0811 0.74 +1.5 806,361 - nha1 Synpcc7942_0811 0.74 +0.1 806,368 - nha1 Synpcc7942_0811 0.75 +0.6 806,378 + nha1 Synpcc7942_0811 0.75 -3.7 806,378 + nha1 Synpcc7942_0811 0.75 -1.1 806,385 + nha1 Synpcc7942_0811 0.76 +0.4 806,387 + nha1 Synpcc7942_0811 0.76 -0.6 806,388 - nha1 Synpcc7942_0811 0.76 -0.3 806,393 - nha1 Synpcc7942_0811 0.76 +0.4 806,398 + nha1 Synpcc7942_0811 0.77 +0.1 806,399 + nha1 Synpcc7942_0811 0.77 +0.8 806,400 - nha1 Synpcc7942_0811 0.77 -0.7 806,400 - nha1 Synpcc7942_0811 0.77 -1.8 806,416 + nha1 Synpcc7942_0811 0.78 -0.4 806,419 - nha1 Synpcc7942_0811 0.78 -3.1 806,440 - nha1 Synpcc7942_0811 0.79 -1.9 806,458 + nha1 Synpcc7942_0811 0.80 -4.2 806,466 - nha1 Synpcc7942_0811 0.81 -0.4 806,466 - nha1 Synpcc7942_0811 0.81 -1.3 806,466 - nha1 Synpcc7942_0811 0.81 +0.1 806,466 - nha1 Synpcc7942_0811 0.81 +1.3 806,480 + nha1 Synpcc7942_0811 0.82 -1.5 806,480 + nha1 Synpcc7942_0811 0.82 +0.5 806,485 + nha1 Synpcc7942_0811 0.82 -2.5 806,488 - nha1 Synpcc7942_0811 0.82 -1.0 806,488 - nha1 Synpcc7942_0811 0.82 -2.8 806,488 - nha1 Synpcc7942_0811 0.82 +0.5 806,488 - nha1 Synpcc7942_0811 0.82 -0.5 806,488 - nha1 Synpcc7942_0811 0.82 -2.5 806,488 - nha1 Synpcc7942_0811 0.82 -0.7 806,493 - nha1 Synpcc7942_0811 0.83 -1.5 806,520 + nha1 Synpcc7942_0811 0.84 +1.1 806,552 - nha1 Synpcc7942_0811 0.86 -1.4 806,556 + +1.7 806,564 - nha1 Synpcc7942_0811 0.87 +0.7 806,564 - nha1 Synpcc7942_0811 0.87 +0.6 806,567 - nha1 Synpcc7942_0811 0.87 +0.4 806,572 - nha1 Synpcc7942_0811 0.88 +0.1 806,584 - nha1 Synpcc7942_0811 0.88 -0.8 806,589 - nha1 Synpcc7942_0811 0.89 -0.5 806,631 - -0.9 806,652 - -1.1 806,652 - -1.0 806,684 + -0.3 806,689 + +1.9 806,692 - -1.8 806,719 - -1.2 806,733 + -0.9 806,733 + -1.3 806,743 + -1.9 806,803 + -0.7 806,803 + -1.8 806,806 + -1.0 806,808 + -1.9 806,816 - +0.6 806,818 + +0.8 806,821 - -1.1 806,821 - +0.6 806,827 + +0.6 806,830 + -0.4 806,855 - -1.6 806,896 - +0.7 806,927 - -0.5 806,927 - -0.2 806,927 - -1.2 806,951 - -2.9 806,961 - -1.3 806,973 + +2.5 807,021 + Synpcc7942_0812 0.14 +0.1 807,021 + Synpcc7942_0812 0.14 -0.3 807,021 + Synpcc7942_0812 0.14 +1.8 807,028 - Synpcc7942_0812 0.15 -0.4 807,029 - Synpcc7942_0812 0.15 +1.0 807,068 + Synpcc7942_0812 0.19 +0.7 807,075 - Synpcc7942_0812 0.20 +1.1 807,134 + Synpcc7942_0812 0.26 +0.3 807,213 - Synpcc7942_0812 0.35 +1.3 807,217 + Synpcc7942_0812 0.35 +0.4 807,217 + Synpcc7942_0812 0.35 -0.9 807,268 + Synpcc7942_0812 0.41 -0.4 807,291 + Synpcc7942_0812 0.43 +2.4 807,294 - Synpcc7942_0812 0.44 -0.7 807,299 - Synpcc7942_0812 0.44 -1.0 807,319 + Synpcc7942_0812 0.46 +0.3 807,323 + +1.7 807,337 + Synpcc7942_0812 0.48 -1.5 807,352 - Synpcc7942_0812 0.50 +1.1 807,355 + +0.9 807,360 + Synpcc7942_0812 0.51 +0.1 807,373 - Synpcc7942_0812 0.52 +0.8 807,383 - Synpcc7942_0812 0.53 +1.1 807,398 + Synpcc7942_0812 0.55 -1.3 807,399 + Synpcc7942_0812 0.55 +1.5 807,399 + Synpcc7942_0812 0.55 +0.1 807,399 + Synpcc7942_0812 0.55 -0.2 807,404 + Synpcc7942_0812 0.55 +0.1 807,406 - +1.5 807,406 - Synpcc7942_0812 0.56 -0.7 807,407 - Synpcc7942_0812 0.56 +1.0 807,410 + Synpcc7942_0812 0.56 -0.5 807,416 - Synpcc7942_0812 0.57 -1.0 807,418 - +4.4 807,433 + Synpcc7942_0812 0.59 -1.6 807,439 + Synpcc7942_0812 0.59 +1.8 807,477 + Synpcc7942_0812 0.63 -0.6 807,482 + Synpcc7942_0812 0.64 +1.5 807,485 - Synpcc7942_0812 0.64 -2.8 807,490 - Synpcc7942_0812 0.65 +0.4 807,500 - Synpcc7942_0812 0.66 +1.4 807,512 + Synpcc7942_0812 0.67 +0.7 807,512 + Synpcc7942_0812 0.67 +0.6 807,512 + Synpcc7942_0812 0.67 +0.4 807,514 + Synpcc7942_0812 0.67 +0.4 807,522 + Synpcc7942_0812 0.68 +2.1 807,522 - +2.6 807,561 + Synpcc7942_0812 0.73 -1.4 807,602 + Synpcc7942_0812 0.77 -0.4 807,607 + Synpcc7942_0812 0.78 -0.2 807,610 + Synpcc7942_0812 0.78 +0.7 807,610 - Synpcc7942_0812 0.78 +0.4 807,738 + +0.6 807,746 - +1.5 807,746 - +1.0 807,746 - -2.4 807,746 - -1.3 807,770 - +0.8 807,770 - -0.1 807,773 + -1.6 807,773 + +1.7 807,781 - -0.4 807,781 - -2.3 807,791 - -0.8 807,804 + +0.8 807,827 - +1.1 807,829 + +0.4 807,837 - -0.1
Or see this region's nucleotide sequence