Experiment: Time0 for outgrown library 2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0662 and cya2 are separated by 119 nucleotides cya2 and Synpcc7942_0664 overlap by 1 nucleotides
Synpcc7942_0662: Synpcc7942_0662 - hypothetical protein, at 657,943 to 658,857
_0662
Synpcc7942_0663: cya2 - putative adenylate/guanylate cyclase, at 658,977 to 660,875
cya2
Synpcc7942_0664: Synpcc7942_0664 - Cyclic nucleotide-binding, at 660,875 to 662,224
_0664
Position (kb) 658
659
660
661 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 657.982 kb on - strand at 657.982 kb on - strand at 657.984 kb on + strand at 657.990 kb on - strand at 657.992 kb on - strand at 657.992 kb on - strand at 658.000 kb on + strand at 658.000 kb on - strand at 658.003 kb on - strand at 658.013 kb on - strand at 658.043 kb on - strand, within Synpcc7942_0662 at 658.063 kb on + strand, within Synpcc7942_0662 at 658.118 kb on + strand, within Synpcc7942_0662 at 658.194 kb on - strand, within Synpcc7942_0662 at 658.246 kb on - strand, within Synpcc7942_0662 at 658.286 kb on + strand, within Synpcc7942_0662 at 658.329 kb on + strand, within Synpcc7942_0662 at 658.337 kb on - strand, within Synpcc7942_0662 at 658.397 kb on + strand, within Synpcc7942_0662 at 658.399 kb on + strand, within Synpcc7942_0662 at 658.405 kb on - strand, within Synpcc7942_0662 at 658.412 kb on + strand, within Synpcc7942_0662 at 658.412 kb on + strand, within Synpcc7942_0662 at 658.412 kb on + strand, within Synpcc7942_0662 at 658.415 kb on - strand, within Synpcc7942_0662 at 658.423 kb on + strand, within Synpcc7942_0662 at 658.442 kb on + strand, within Synpcc7942_0662 at 658.485 kb on + strand, within Synpcc7942_0662 at 658.560 kb on + strand at 658.579 kb on + strand, within Synpcc7942_0662 at 658.586 kb on - strand, within Synpcc7942_0662 at 658.610 kb on - strand, within Synpcc7942_0662 at 658.646 kb on + strand, within Synpcc7942_0662 at 658.646 kb on + strand, within Synpcc7942_0662 at 658.654 kb on - strand, within Synpcc7942_0662 at 658.663 kb on - strand, within Synpcc7942_0662 at 658.708 kb on - strand, within Synpcc7942_0662 at 658.720 kb on - strand, within Synpcc7942_0662 at 658.724 kb on + strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.755 kb on - strand, within Synpcc7942_0662 at 658.762 kb on + strand, within Synpcc7942_0662 at 658.816 kb on + strand at 658.825 kb on - strand at 658.825 kb on - strand at 658.826 kb on + strand at 658.876 kb on - strand at 658.879 kb on + strand at 658.887 kb on - strand at 658.903 kb on + strand at 658.903 kb on + strand at 658.911 kb on - strand at 658.920 kb on + strand at 658.952 kb on - strand at 658.952 kb on - strand at 658.952 kb on - strand at 658.954 kb on + strand at 658.959 kb on - strand at 658.980 kb on + strand at 658.993 kb on - strand at 658.993 kb on - strand at 659.021 kb on + strand at 659.047 kb on - strand at 659.056 kb on + strand at 659.064 kb on - strand at 659.079 kb on - strand at 659.083 kb on - strand at 659.120 kb on + strand at 659.120 kb on + strand at 659.120 kb on - strand at 659.122 kb on + strand at 659.122 kb on + strand at 659.125 kb on - strand at 659.153 kb on + strand at 659.231 kb on + strand, within cya2 at 659.231 kb on + strand, within cya2 at 659.231 kb on - strand, within cya2 at 659.231 kb on - strand, within cya2 at 659.238 kb on - strand, within cya2 at 659.239 kb on - strand, within cya2 at 659.259 kb on + strand, within cya2 at 659.310 kb on + strand, within cya2 at 659.369 kb on + strand, within cya2 at 659.379 kb on + strand, within cya2 at 659.392 kb on - strand, within cya2 at 659.392 kb on - strand, within cya2 at 659.392 kb on - strand, within cya2 at 659.423 kb on - strand, within cya2 at 659.429 kb on + strand, within cya2 at 659.446 kb on + strand, within cya2 at 659.452 kb on + strand, within cya2 at 659.459 kb on - strand, within cya2 at 659.479 kb on + strand, within cya2 at 659.479 kb on + strand, within cya2 at 659.487 kb on - strand, within cya2 at 659.503 kb on + strand at 659.545 kb on - strand, within cya2 at 659.550 kb on - strand, within cya2 at 659.640 kb on + strand, within cya2 at 659.650 kb on + strand, within cya2 at 659.650 kb on + strand, within cya2 at 659.653 kb on - strand, within cya2 at 659.658 kb on - strand, within cya2 at 659.658 kb on - strand, within cya2 at 659.678 kb on + strand, within cya2 at 659.702 kb on - strand, within cya2 at 659.721 kb on + strand, within cya2 at 659.721 kb on + strand, within cya2 at 659.729 kb on - strand, within cya2 at 659.755 kb on - strand, within cya2 at 659.780 kb on + strand, within cya2 at 659.795 kb on + strand, within cya2 at 659.795 kb on + strand, within cya2 at 659.797 kb on + strand, within cya2 at 659.803 kb on - strand, within cya2 at 659.803 kb on - strand, within cya2 at 659.803 kb on - strand, within cya2 at 659.805 kb on + strand, within cya2 at 659.805 kb on + strand at 659.813 kb on - strand, within cya2 at 659.813 kb on - strand, within cya2 at 659.818 kb on - strand, within cya2 at 659.840 kb on + strand, within cya2 at 659.857 kb on + strand, within cya2 at 659.878 kb on - strand, within cya2 at 659.884 kb on + strand, within cya2 at 659.891 kb on + strand, within cya2 at 659.991 kb on + strand, within cya2 at 659.991 kb on + strand, within cya2 at 659.994 kb on - strand, within cya2 at 659.999 kb on - strand, within cya2 at 660.004 kb on - strand, within cya2 at 660.009 kb on - strand, within cya2 at 660.022 kb on + strand, within cya2 at 660.030 kb on - strand, within cya2 at 660.030 kb on - strand, within cya2 at 660.033 kb on + strand, within cya2 at 660.039 kb on + strand, within cya2 at 660.039 kb on + strand, within cya2 at 660.045 kb on + strand, within cya2 at 660.047 kb on - strand, within cya2 at 660.053 kb on - strand, within cya2 at 660.068 kb on - strand, within cya2 at 660.070 kb on - strand, within cya2 at 660.077 kb on - strand, within cya2 at 660.083 kb on + strand, within cya2 at 660.125 kb on - strand, within cya2 at 660.145 kb on + strand, within cya2 at 660.152 kb on + strand, within cya2 at 660.152 kb on + strand, within cya2 at 660.153 kb on - strand, within cya2 at 660.153 kb on - strand, within cya2 at 660.165 kb on - strand, within cya2 at 660.204 kb on + strand at 660.204 kb on + strand, within cya2 at 660.204 kb on + strand, within cya2 at 660.212 kb on - strand, within cya2 at 660.243 kb on + strand, within cya2 at 660.248 kb on + strand, within cya2 at 660.250 kb on + strand, within cya2 at 660.250 kb on + strand, within cya2 at 660.251 kb on - strand, within cya2 at 660.256 kb on - strand, within cya2 at 660.268 kb on + strand, within cya2 at 660.273 kb on + strand, within cya2 at 660.273 kb on + strand, within cya2 at 660.273 kb on - strand, within cya2 at 660.281 kb on - strand, within cya2 at 660.422 kb on - strand, within cya2 at 660.447 kb on + strand, within cya2 at 660.459 kb on - strand, within cya2 at 660.482 kb on - strand, within cya2 at 660.502 kb on + strand, within cya2 at 660.503 kb on + strand, within cya2 at 660.555 kb on + strand, within cya2 at 660.563 kb on - strand, within cya2 at 660.563 kb on - strand, within cya2 at 660.567 kb on + strand, within cya2 at 660.567 kb on + strand at 660.597 kb on + strand, within cya2 at 660.644 kb on - strand, within cya2 at 660.693 kb on + strand at 660.702 kb on - strand at 660.718 kb on - strand at 660.779 kb on + strand at 660.789 kb on + strand at 660.789 kb on + strand at 660.797 kb on - strand at 660.815 kb on - strand at 660.849 kb on - strand at 660.867 kb on - strand at 660.873 kb on + strand at 660.914 kb on + strand at 660.914 kb on + strand at 660.922 kb on - strand at 660.922 kb on - strand at 660.922 kb on - strand at 660.983 kb on + strand at 660.988 kb on + strand at 661.046 kb on + strand, within Synpcc7942_0664 at 661.046 kb on + strand, within Synpcc7942_0664 at 661.055 kb on - strand, within Synpcc7942_0664 at 661.055 kb on - strand, within Synpcc7942_0664 at 661.059 kb on + strand, within Synpcc7942_0664 at 661.077 kb on + strand, within Synpcc7942_0664 at 661.116 kb on + strand, within Synpcc7942_0664 at 661.145 kb on - strand, within Synpcc7942_0664 at 661.155 kb on - strand, within Synpcc7942_0664 at 661.193 kb on - strand, within Synpcc7942_0664 at 661.314 kb on + strand, within Synpcc7942_0664 at 661.463 kb on - strand, within Synpcc7942_0664 at 661.465 kb on + strand, within Synpcc7942_0664 at 661.472 kb on - strand, within Synpcc7942_0664 at 661.475 kb on + strand, within Synpcc7942_0664 at 661.483 kb on - strand, within Synpcc7942_0664 at 661.494 kb on - strand, within Synpcc7942_0664 at 661.507 kb on - strand, within Synpcc7942_0664 at 661.507 kb on - strand, within Synpcc7942_0664 at 661.593 kb on - strand, within Synpcc7942_0664 at 661.593 kb on - strand, within Synpcc7942_0664 at 661.599 kb on + strand, within Synpcc7942_0664 at 661.607 kb on - strand, within Synpcc7942_0664 at 661.730 kb on - strand, within Synpcc7942_0664 at 661.738 kb on - strand, within Synpcc7942_0664 at 661.740 kb on - strand, within Synpcc7942_0664 at 661.742 kb on + strand, within Synpcc7942_0664 at 661.764 kb on + strand, within Synpcc7942_0664 at 661.845 kb on + strand, within Synpcc7942_0664
Per-strain Table
Position Strand Gene LocusTag Fraction Time0 for outgrown library 2.0 remove 657,982 - +1.5 657,982 - -1.6 657,984 + +0.0 657,990 - -1.1 657,992 - -3.3 657,992 - +0.1 658,000 + +0.8 658,000 - +0.4 658,003 - -0.2 658,013 - -1.0 658,043 - Synpcc7942_0662 0.11 -0.7 658,063 + Synpcc7942_0662 0.13 -1.3 658,118 + Synpcc7942_0662 0.19 -0.7 658,194 - Synpcc7942_0662 0.27 +1.2 658,246 - Synpcc7942_0662 0.33 -2.4 658,286 + Synpcc7942_0662 0.37 -2.1 658,329 + Synpcc7942_0662 0.42 -0.8 658,337 - Synpcc7942_0662 0.43 -1.1 658,397 + Synpcc7942_0662 0.50 +1.3 658,399 + Synpcc7942_0662 0.50 +1.3 658,405 - Synpcc7942_0662 0.50 +0.4 658,412 + Synpcc7942_0662 0.51 -2.7 658,412 + Synpcc7942_0662 0.51 +0.3 658,412 + Synpcc7942_0662 0.51 +0.6 658,415 - Synpcc7942_0662 0.52 -2.8 658,423 + Synpcc7942_0662 0.52 +1.8 658,442 + Synpcc7942_0662 0.55 -0.6 658,485 + Synpcc7942_0662 0.59 +0.2 658,560 + -1.1 658,579 + Synpcc7942_0662 0.70 -0.9 658,586 - Synpcc7942_0662 0.70 -1.3 658,610 - Synpcc7942_0662 0.73 -2.1 658,646 + Synpcc7942_0662 0.77 -0.3 658,646 + Synpcc7942_0662 0.77 -1.0 658,654 - Synpcc7942_0662 0.78 -0.8 658,663 - Synpcc7942_0662 0.79 +0.9 658,708 - Synpcc7942_0662 0.84 -1.3 658,720 - Synpcc7942_0662 0.85 -1.0 658,724 + Synpcc7942_0662 0.85 +1.7 658,727 - Synpcc7942_0662 0.86 +0.4 658,727 - Synpcc7942_0662 0.86 +0.2 658,727 - Synpcc7942_0662 0.86 +2.1 658,727 - Synpcc7942_0662 0.86 -0.9 658,755 - Synpcc7942_0662 0.89 +1.7 658,762 + Synpcc7942_0662 0.90 -3.9 658,816 + -0.4 658,825 - -2.0 658,825 - -1.3 658,826 + -2.3 658,876 - -0.7 658,879 + -0.1 658,887 - +0.4 658,903 + +0.1 658,903 + -1.0 658,911 - -2.3 658,920 + +1.3 658,952 - +0.9 658,952 - +0.0 658,952 - -0.9 658,954 + +0.5 658,959 - -0.5 658,980 + -1.7 658,993 - -1.9 658,993 - -0.3 659,021 + -0.0 659,047 - +0.7 659,056 + -1.7 659,064 - +0.2 659,079 - +0.9 659,083 - +0.3 659,120 + +0.1 659,120 + -4.4 659,120 - -0.8 659,122 + +0.1 659,122 + +0.2 659,125 - -0.6 659,153 + -0.7 659,231 + cya2 Synpcc7942_0663 0.13 +0.4 659,231 + cya2 Synpcc7942_0663 0.13 -1.0 659,231 - cya2 Synpcc7942_0663 0.13 +1.8 659,231 - cya2 Synpcc7942_0663 0.13 -0.7 659,238 - cya2 Synpcc7942_0663 0.14 +0.2 659,239 - cya2 Synpcc7942_0663 0.14 -3.6 659,259 + cya2 Synpcc7942_0663 0.15 +0.8 659,310 + cya2 Synpcc7942_0663 0.18 -1.2 659,369 + cya2 Synpcc7942_0663 0.21 -0.5 659,379 + cya2 Synpcc7942_0663 0.21 +1.4 659,392 - cya2 Synpcc7942_0663 0.22 +1.2 659,392 - cya2 Synpcc7942_0663 0.22 -2.4 659,392 - cya2 Synpcc7942_0663 0.22 -2.0 659,423 - cya2 Synpcc7942_0663 0.23 -2.9 659,429 + cya2 Synpcc7942_0663 0.24 -1.1 659,446 + cya2 Synpcc7942_0663 0.25 -1.5 659,452 + cya2 Synpcc7942_0663 0.25 +0.0 659,459 - cya2 Synpcc7942_0663 0.25 -1.6 659,479 + cya2 Synpcc7942_0663 0.26 +0.0 659,479 + cya2 Synpcc7942_0663 0.26 +1.6 659,487 - cya2 Synpcc7942_0663 0.27 +1.8 659,503 + +0.1 659,545 - cya2 Synpcc7942_0663 0.30 -0.8 659,550 - cya2 Synpcc7942_0663 0.30 -1.7 659,640 + cya2 Synpcc7942_0663 0.35 +1.0 659,650 + cya2 Synpcc7942_0663 0.35 +0.9 659,650 + cya2 Synpcc7942_0663 0.35 -2.5 659,653 - cya2 Synpcc7942_0663 0.36 +1.5 659,658 - cya2 Synpcc7942_0663 0.36 +2.8 659,658 - cya2 Synpcc7942_0663 0.36 -1.4 659,678 + cya2 Synpcc7942_0663 0.37 -0.6 659,702 - cya2 Synpcc7942_0663 0.38 -1.0 659,721 + cya2 Synpcc7942_0663 0.39 -0.9 659,721 + cya2 Synpcc7942_0663 0.39 -0.5 659,729 - cya2 Synpcc7942_0663 0.40 -0.9 659,755 - cya2 Synpcc7942_0663 0.41 +2.5 659,780 + cya2 Synpcc7942_0663 0.42 +0.8 659,795 + cya2 Synpcc7942_0663 0.43 -2.1 659,795 + cya2 Synpcc7942_0663 0.43 -0.8 659,797 + cya2 Synpcc7942_0663 0.43 -1.4 659,803 - cya2 Synpcc7942_0663 0.43 -1.2 659,803 - cya2 Synpcc7942_0663 0.43 -0.4 659,803 - cya2 Synpcc7942_0663 0.43 +0.5 659,805 + cya2 Synpcc7942_0663 0.44 -0.8 659,805 + +1.5 659,813 - cya2 Synpcc7942_0663 0.44 -2.7 659,813 - cya2 Synpcc7942_0663 0.44 -1.9 659,818 - cya2 Synpcc7942_0663 0.44 +0.0 659,840 + cya2 Synpcc7942_0663 0.45 -0.3 659,857 + cya2 Synpcc7942_0663 0.46 -2.2 659,878 - cya2 Synpcc7942_0663 0.47 -0.6 659,884 + cya2 Synpcc7942_0663 0.48 +1.7 659,891 + cya2 Synpcc7942_0663 0.48 -1.1 659,991 + cya2 Synpcc7942_0663 0.53 -2.3 659,991 + cya2 Synpcc7942_0663 0.53 +0.6 659,994 - cya2 Synpcc7942_0663 0.54 +0.2 659,999 - cya2 Synpcc7942_0663 0.54 +0.1 660,004 - cya2 Synpcc7942_0663 0.54 -0.0 660,009 - cya2 Synpcc7942_0663 0.54 +1.2 660,022 + cya2 Synpcc7942_0663 0.55 -0.7 660,030 - cya2 Synpcc7942_0663 0.55 -2.3 660,030 - cya2 Synpcc7942_0663 0.55 -1.3 660,033 + cya2 Synpcc7942_0663 0.56 -0.8 660,039 + cya2 Synpcc7942_0663 0.56 +1.0 660,039 + cya2 Synpcc7942_0663 0.56 +0.8 660,045 + cya2 Synpcc7942_0663 0.56 +1.4 660,047 - cya2 Synpcc7942_0663 0.56 -0.2 660,053 - cya2 Synpcc7942_0663 0.57 -0.4 660,068 - cya2 Synpcc7942_0663 0.57 +0.1 660,070 - cya2 Synpcc7942_0663 0.58 +0.2 660,077 - cya2 Synpcc7942_0663 0.58 -1.0 660,083 + cya2 Synpcc7942_0663 0.58 -1.3 660,125 - cya2 Synpcc7942_0663 0.60 +1.7 660,145 + cya2 Synpcc7942_0663 0.62 +1.0 660,152 + cya2 Synpcc7942_0663 0.62 -2.0 660,152 + cya2 Synpcc7942_0663 0.62 -2.8 660,153 - cya2 Synpcc7942_0663 0.62 -1.2 660,153 - cya2 Synpcc7942_0663 0.62 +0.7 660,165 - cya2 Synpcc7942_0663 0.63 +0.2 660,204 + +1.0 660,204 + cya2 Synpcc7942_0663 0.65 -2.5 660,204 + cya2 Synpcc7942_0663 0.65 -2.2 660,212 - cya2 Synpcc7942_0663 0.65 -0.8 660,243 + cya2 Synpcc7942_0663 0.67 +0.4 660,248 + cya2 Synpcc7942_0663 0.67 +0.1 660,250 + cya2 Synpcc7942_0663 0.67 +0.4 660,250 + cya2 Synpcc7942_0663 0.67 +0.4 660,251 - cya2 Synpcc7942_0663 0.67 -1.5 660,256 - cya2 Synpcc7942_0663 0.67 -1.1 660,268 + cya2 Synpcc7942_0663 0.68 +0.4 660,273 + cya2 Synpcc7942_0663 0.68 -2.2 660,273 + cya2 Synpcc7942_0663 0.68 -0.7 660,273 - cya2 Synpcc7942_0663 0.68 -0.8 660,281 - cya2 Synpcc7942_0663 0.69 -2.6 660,422 - cya2 Synpcc7942_0663 0.76 -0.3 660,447 + cya2 Synpcc7942_0663 0.77 -1.3 660,459 - cya2 Synpcc7942_0663 0.78 +0.4 660,482 - cya2 Synpcc7942_0663 0.79 -3.6 660,502 + cya2 Synpcc7942_0663 0.80 +0.7 660,503 + cya2 Synpcc7942_0663 0.80 -1.4 660,555 + cya2 Synpcc7942_0663 0.83 -0.5 660,563 - cya2 Synpcc7942_0663 0.84 +1.1 660,563 - cya2 Synpcc7942_0663 0.84 +1.1 660,567 + cya2 Synpcc7942_0663 0.84 +0.8 660,567 + +1.1 660,597 + cya2 Synpcc7942_0663 0.85 -0.7 660,644 - cya2 Synpcc7942_0663 0.88 -2.9 660,693 + -1.3 660,702 - -1.8 660,718 - +1.0 660,779 + -0.4 660,789 + +0.1 660,789 + +0.5 660,797 - -2.2 660,815 - -1.0 660,849 - +1.0 660,867 - +1.1 660,873 + +0.7 660,914 + +1.2 660,914 + +0.9 660,922 - +0.5 660,922 - +0.1 660,922 - -1.3 660,983 + +1.3 660,988 + -0.3 661,046 + Synpcc7942_0664 0.13 +1.5 661,046 + Synpcc7942_0664 0.13 +0.1 661,055 - Synpcc7942_0664 0.13 +0.1 661,055 - Synpcc7942_0664 0.13 +1.3 661,059 + Synpcc7942_0664 0.14 -0.1 661,077 + Synpcc7942_0664 0.15 +0.5 661,116 + Synpcc7942_0664 0.18 -2.1 661,145 - Synpcc7942_0664 0.20 -0.9 661,155 - Synpcc7942_0664 0.21 -0.8 661,193 - Synpcc7942_0664 0.24 -0.9 661,314 + Synpcc7942_0664 0.33 -0.7 661,463 - Synpcc7942_0664 0.44 -0.8 661,465 + Synpcc7942_0664 0.44 -0.2 661,472 - Synpcc7942_0664 0.44 -3.5 661,475 + Synpcc7942_0664 0.44 -1.6 661,483 - Synpcc7942_0664 0.45 -0.7 661,494 - Synpcc7942_0664 0.46 +0.1 661,507 - Synpcc7942_0664 0.47 -1.1 661,507 - Synpcc7942_0664 0.47 +1.9 661,593 - Synpcc7942_0664 0.53 -1.6 661,593 - Synpcc7942_0664 0.53 +0.2 661,599 + Synpcc7942_0664 0.54 -1.1 661,607 - Synpcc7942_0664 0.54 -3.0 661,730 - Synpcc7942_0664 0.63 +0.5 661,738 - Synpcc7942_0664 0.64 +1.5 661,740 - Synpcc7942_0664 0.64 +0.1 661,742 + Synpcc7942_0664 0.64 -1.1 661,764 + Synpcc7942_0664 0.66 -0.7 661,845 + Synpcc7942_0664 0.72 +0.7
Or see this region's nucleotide sequence