Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1734

Experiment: MoYLS4 media with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1733 and DvMF_1734 are separated by 144 nucleotidesDvMF_1734 and DvMF_1735 are separated by 124 nucleotides DvMF_1733: DvMF_1733 - nickel-dependent hydrogenase large subunit (RefSeq), at 2,117,876 to 2,119,525 _1733 DvMF_1734: DvMF_1734 - ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq), at 2,119,670 to 2,120,653 _1734 DvMF_1735: DvMF_1735 - protein of unknown function UPF0153 (RefSeq), at 2,120,778 to 2,121,752 _1735 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -1 0 1at 2118.689 kb on - strand, within DvMF_1733at 2118.943 kb on + strand, within DvMF_1733at 2118.950 kb on + strand, within DvMF_1733at 2119.094 kb on + strand, within DvMF_1733at 2119.231 kb on + strand, within DvMF_1733at 2119.668 kb on - strandat 2120.726 kb on + strandat 2120.924 kb on + strand, within DvMF_1735at 2120.964 kb on - strand, within DvMF_1735at 2121.370 kb on - strand, within DvMF_1735at 2121.587 kb on + strand, within DvMF_1735at 2121.624 kb on + strand, within DvMF_1735at 2121.650 kb on + strand, within DvMF_1735

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2
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2,118,689 - DvMF_1733 0.49 -0.7
2,118,943 + DvMF_1733 0.65 -0.1
2,118,950 + DvMF_1733 0.65 -0.3
2,119,094 + DvMF_1733 0.74 -0.5
2,119,231 + DvMF_1733 0.82 -0.3
2,119,668 - -1.1
2,120,726 + -0.7
2,120,924 + DvMF_1735 0.15 +0.0
2,120,964 - DvMF_1735 0.19 -0.9
2,121,370 - DvMF_1735 0.61 -0.4
2,121,587 + DvMF_1735 0.83 -0.3
2,121,624 + DvMF_1735 0.87 -0.4
2,121,650 + DvMF_1735 0.89 -0.3

Or see this region's nucleotide sequence