Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1516

Experiment: MoYLS4 media with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1515 and DvMF_1516 overlap by 4 nucleotidesDvMF_1516 and DvMF_1517 overlap by 4 nucleotides DvMF_1515: DvMF_1515 - acriflavin resistance protein (RefSeq), at 1,867,171 to 1,870,287 _1515 DvMF_1516: DvMF_1516 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,870,284 to 1,871,606 _1516 DvMF_1517: DvMF_1517 - transcriptional regulator, TetR family (RefSeq), at 1,871,603 to 1,872,721 _1517 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -2 -1 0 1at 1869.418 kb on - strand, within DvMF_1515at 1869.481 kb on + strand, within DvMF_1515at 1869.583 kb on - strand, within DvMF_1515at 1869.595 kb on + strand, within DvMF_1515at 1869.612 kb on + strand, within DvMF_1515at 1869.737 kb on + strand, within DvMF_1515at 1869.760 kb on - strand, within DvMF_1515at 1869.765 kb on - strand, within DvMF_1515at 1869.796 kb on - strand, within DvMF_1515at 1869.828 kb on + strand, within DvMF_1515at 1869.905 kb on - strand, within DvMF_1515at 1870.026 kb on + strandat 1870.034 kb on - strandat 1870.078 kb on - strandat 1870.449 kb on - strand, within DvMF_1516at 1870.510 kb on + strand, within DvMF_1516at 1870.510 kb on + strand, within DvMF_1516at 1870.518 kb on - strand, within DvMF_1516at 1870.731 kb on + strand, within DvMF_1516at 1870.858 kb on + strand, within DvMF_1516at 1870.927 kb on - strand, within DvMF_1516at 1870.932 kb on - strand, within DvMF_1516at 1871.299 kb on - strand, within DvMF_1516at 1871.307 kb on - strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.550 kb on + strandat 1871.584 kb on - strandat 1871.772 kb on - strand, within DvMF_1517at 1871.885 kb on - strand, within DvMF_1517at 1871.890 kb on + strand, within DvMF_1517at 1872.083 kb on - strand, within DvMF_1517at 1872.100 kb on + strand, within DvMF_1517at 1872.272 kb on + strand, within DvMF_1517at 1872.280 kb on - strand, within DvMF_1517at 1872.295 kb on - strand, within DvMF_1517at 1872.436 kb on + strand, within DvMF_1517at 1872.485 kb on - strand, within DvMF_1517at 1872.504 kb on - strand, within DvMF_1517at 1872.552 kb on + strand, within DvMF_1517at 1872.586 kb on - strand, within DvMF_1517

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2
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1,869,418 - DvMF_1515 0.72 -2.1
1,869,481 + DvMF_1515 0.74 -0.6
1,869,583 - DvMF_1515 0.77 -0.6
1,869,595 + DvMF_1515 0.78 -0.5
1,869,612 + DvMF_1515 0.78 -1.2
1,869,737 + DvMF_1515 0.82 -0.9
1,869,760 - DvMF_1515 0.83 -0.5
1,869,765 - DvMF_1515 0.83 -0.5
1,869,796 - DvMF_1515 0.84 -0.5
1,869,828 + DvMF_1515 0.85 -0.3
1,869,905 - DvMF_1515 0.88 -0.5
1,870,026 + -0.3
1,870,034 - -1.5
1,870,078 - -0.4
1,870,449 - DvMF_1516 0.12 -0.8
1,870,510 + DvMF_1516 0.17 -2.1
1,870,510 + DvMF_1516 0.17 -0.4
1,870,518 - DvMF_1516 0.18 -0.7
1,870,731 + DvMF_1516 0.34 -0.6
1,870,858 + DvMF_1516 0.43 -0.6
1,870,927 - DvMF_1516 0.49 -1.1
1,870,932 - DvMF_1516 0.49 -0.5
1,871,299 - DvMF_1516 0.77 -0.9
1,871,307 - DvMF_1516 0.77 -0.8
1,871,385 + DvMF_1516 0.83 -0.5
1,871,385 + DvMF_1516 0.83 -0.5
1,871,385 + DvMF_1516 0.83 -0.6
1,871,385 + DvMF_1516 0.83 -0.6
1,871,550 + -0.8
1,871,584 - -0.8
1,871,772 - DvMF_1517 0.15 -0.3
1,871,885 - DvMF_1517 0.25 -0.0
1,871,890 + DvMF_1517 0.26 -0.4
1,872,083 - DvMF_1517 0.43 -0.2
1,872,100 + DvMF_1517 0.44 +0.3
1,872,272 + DvMF_1517 0.60 +0.1
1,872,280 - DvMF_1517 0.61 -0.3
1,872,295 - DvMF_1517 0.62 -0.1
1,872,436 + DvMF_1517 0.74 -0.2
1,872,485 - DvMF_1517 0.79 -0.2
1,872,504 - DvMF_1517 0.81 -0.1
1,872,552 + DvMF_1517 0.85 -0.3
1,872,586 - DvMF_1517 0.88 -0.4

Or see this region's nucleotide sequence