Experiment: MoYLS4 media with N2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1515 and DvMF_1516 overlap by 4 nucleotides DvMF_1516 and DvMF_1517 overlap by 4 nucleotides
DvMF_1515: DvMF_1515 - acriflavin resistance protein (RefSeq), at 1,867,171 to 1,870,287
_1515
DvMF_1516: DvMF_1516 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,870,284 to 1,871,606
_1516
DvMF_1517: DvMF_1517 - transcriptional regulator, TetR family (RefSeq), at 1,871,603 to 1,872,721
_1517
Position (kb)
1870
1871
1872 Strain fitness (log2 ratio)
-2
-1
0
1 at 1869.418 kb on - strand, within DvMF_1515 at 1869.481 kb on + strand, within DvMF_1515 at 1869.583 kb on - strand, within DvMF_1515 at 1869.595 kb on + strand, within DvMF_1515 at 1869.612 kb on + strand, within DvMF_1515 at 1869.737 kb on + strand, within DvMF_1515 at 1869.760 kb on - strand, within DvMF_1515 at 1869.765 kb on - strand, within DvMF_1515 at 1869.796 kb on - strand, within DvMF_1515 at 1869.828 kb on + strand, within DvMF_1515 at 1869.905 kb on - strand, within DvMF_1515 at 1870.026 kb on + strand at 1870.034 kb on - strand at 1870.078 kb on - strand at 1870.449 kb on - strand, within DvMF_1516 at 1870.510 kb on + strand, within DvMF_1516 at 1870.510 kb on + strand, within DvMF_1516 at 1870.518 kb on - strand, within DvMF_1516 at 1870.731 kb on + strand, within DvMF_1516 at 1870.858 kb on + strand, within DvMF_1516 at 1870.927 kb on - strand, within DvMF_1516 at 1870.932 kb on - strand, within DvMF_1516 at 1871.299 kb on - strand, within DvMF_1516 at 1871.307 kb on - strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.550 kb on + strand at 1871.584 kb on - strand at 1871.772 kb on - strand, within DvMF_1517 at 1871.885 kb on - strand, within DvMF_1517 at 1871.890 kb on + strand, within DvMF_1517 at 1872.083 kb on - strand, within DvMF_1517 at 1872.100 kb on + strand, within DvMF_1517 at 1872.272 kb on + strand, within DvMF_1517 at 1872.280 kb on - strand, within DvMF_1517 at 1872.295 kb on - strand, within DvMF_1517 at 1872.436 kb on + strand, within DvMF_1517 at 1872.485 kb on - strand, within DvMF_1517 at 1872.504 kb on - strand, within DvMF_1517 at 1872.552 kb on + strand, within DvMF_1517 at 1872.586 kb on - strand, within DvMF_1517
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 remove 1,869,418 - DvMF_1515 0.72 -2.1 1,869,481 + DvMF_1515 0.74 -0.6 1,869,583 - DvMF_1515 0.77 -0.6 1,869,595 + DvMF_1515 0.78 -0.5 1,869,612 + DvMF_1515 0.78 -1.2 1,869,737 + DvMF_1515 0.82 -0.9 1,869,760 - DvMF_1515 0.83 -0.5 1,869,765 - DvMF_1515 0.83 -0.5 1,869,796 - DvMF_1515 0.84 -0.5 1,869,828 + DvMF_1515 0.85 -0.3 1,869,905 - DvMF_1515 0.88 -0.5 1,870,026 + -0.3 1,870,034 - -1.5 1,870,078 - -0.4 1,870,449 - DvMF_1516 0.12 -0.8 1,870,510 + DvMF_1516 0.17 -2.1 1,870,510 + DvMF_1516 0.17 -0.4 1,870,518 - DvMF_1516 0.18 -0.7 1,870,731 + DvMF_1516 0.34 -0.6 1,870,858 + DvMF_1516 0.43 -0.6 1,870,927 - DvMF_1516 0.49 -1.1 1,870,932 - DvMF_1516 0.49 -0.5 1,871,299 - DvMF_1516 0.77 -0.9 1,871,307 - DvMF_1516 0.77 -0.8 1,871,385 + DvMF_1516 0.83 -0.5 1,871,385 + DvMF_1516 0.83 -0.5 1,871,385 + DvMF_1516 0.83 -0.6 1,871,385 + DvMF_1516 0.83 -0.6 1,871,550 + -0.8 1,871,584 - -0.8 1,871,772 - DvMF_1517 0.15 -0.3 1,871,885 - DvMF_1517 0.25 -0.0 1,871,890 + DvMF_1517 0.26 -0.4 1,872,083 - DvMF_1517 0.43 -0.2 1,872,100 + DvMF_1517 0.44 +0.3 1,872,272 + DvMF_1517 0.60 +0.1 1,872,280 - DvMF_1517 0.61 -0.3 1,872,295 - DvMF_1517 0.62 -0.1 1,872,436 + DvMF_1517 0.74 -0.2 1,872,485 - DvMF_1517 0.79 -0.2 1,872,504 - DvMF_1517 0.81 -0.1 1,872,552 + DvMF_1517 0.85 -0.3 1,872,586 - DvMF_1517 0.88 -0.4
Or see this region's nucleotide sequence