Experiment: MoYLS4 media with N2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0562 and DvMF_0563 are separated by 491 nucleotides DvMF_0563 and DvMF_0564 are separated by 102 nucleotides DvMF_0564 and aspA overlap by 4 nucleotides
DvMF_0562: DvMF_0562 - dihydrodipicolinate synthase (RefSeq), at 661,492 to 662,370
_0562
DvMF_0563: DvMF_0563 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 662,862 to 665,171
_0563
DvMF_0564: DvMF_0564 - cyclase family protein (RefSeq), at 665,274 to 666,008
_0564
DvMF_0565: aspA - aspartate ammonia-lyase (RefSeq), at 666,005 to 667,570
aspA
Position (kb) 662
663
664
665
666 Strain fitness (log2 ratio) -2
-1
0
1 at 662.420 kb on - strand at 662.865 kb on + strand at 663.035 kb on - strand at 663.107 kb on - strand, within DvMF_0563 at 663.110 kb on - strand, within DvMF_0563 at 663.415 kb on - strand, within DvMF_0563 at 663.418 kb on + strand, within DvMF_0563 at 663.462 kb on + strand, within DvMF_0563 at 663.550 kb on - strand, within DvMF_0563 at 663.569 kb on - strand, within DvMF_0563 at 663.593 kb on + strand, within DvMF_0563 at 663.601 kb on - strand, within DvMF_0563 at 663.792 kb on + strand, within DvMF_0563 at 664.202 kb on + strand, within DvMF_0563 at 664.950 kb on + strand at 665.226 kb on + strand at 665.257 kb on + strand at 665.378 kb on - strand, within DvMF_0564 at 665.414 kb on + strand, within DvMF_0564 at 665.593 kb on + strand, within DvMF_0564 at 665.884 kb on - strand, within DvMF_0564 at 665.884 kb on - strand, within DvMF_0564 at 666.028 kb on + strand at 666.063 kb on - strand at 666.089 kb on + strand at 666.110 kb on - strand at 666.147 kb on + strand at 666.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 remove 662,420 - +0.1 662,865 + -0.6 663,035 - -0.2 663,107 - DvMF_0563 0.11 -1.9 663,110 - DvMF_0563 0.11 -0.4 663,415 - DvMF_0563 0.24 +0.5 663,418 + DvMF_0563 0.24 -1.2 663,462 + DvMF_0563 0.26 -0.3 663,550 - DvMF_0563 0.30 -0.6 663,569 - DvMF_0563 0.31 -0.8 663,593 + DvMF_0563 0.32 -0.2 663,601 - DvMF_0563 0.32 -0.9 663,792 + DvMF_0563 0.40 +0.1 664,202 + DvMF_0563 0.58 -0.7 664,950 + -0.7 665,226 + -0.3 665,257 + +0.5 665,378 - DvMF_0564 0.14 -0.4 665,414 + DvMF_0564 0.19 -0.2 665,593 + DvMF_0564 0.43 -0.2 665,884 - DvMF_0564 0.83 -0.3 665,884 - DvMF_0564 0.83 +0.2 666,028 + -0.0 666,063 - -0.0 666,089 + +0.6 666,110 - -0.8 666,147 + -1.1 666,149 + +0.2
Or see this region's nucleotide sequence