Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0539

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0538 and DVU0539 are separated by 17 nucleotidesDVU0539 and DVU0540 overlap by 17 nucleotides DVU0538: DVU0538 - AP endonuclease, family 2 (TIGR), at 609,243 to 610,031 DVU0538 DVU0539: DVU0539 - sigma-54 dependent DNA-binding response regulator (TIGR), at 610,049 to 611,452 DVU0539 DVU0540: DVU0540 - sensor histidine kinase (TIGR), at 611,436 to 613,847 DVU0540 Position (kb) 610 611 612Strain fitness (log2 ratio) -2 -1 0 1 2at 609.136 kb on + strandat 609.175 kb on + strandat 609.175 kb on + strandat 609.207 kb on + strandat 609.215 kb on - strandat 609.297 kb on - strandat 609.348 kb on + strand, within DVU0538at 609.348 kb on + strand, within DVU0538at 609.356 kb on - strand, within DVU0538at 609.410 kb on + strand, within DVU0538at 609.410 kb on + strand, within DVU0538at 609.423 kb on + strand, within DVU0538at 609.541 kb on - strand, within DVU0538at 609.582 kb on - strand, within DVU0538at 609.600 kb on - strand, within DVU0538at 609.600 kb on - strand, within DVU0538at 609.622 kb on + strand, within DVU0538at 609.632 kb on - strand, within DVU0538at 609.655 kb on - strand, within DVU0538at 609.697 kb on - strand, within DVU0538at 609.733 kb on + strand, within DVU0538at 609.757 kb on + strand, within DVU0538at 609.798 kb on + strand, within DVU0538at 609.824 kb on - strand, within DVU0538at 609.824 kb on - strand, within DVU0538at 609.873 kb on - strand, within DVU0538at 609.913 kb on + strand, within DVU0538at 610.102 kb on - strandat 610.177 kb on - strandat 610.251 kb on + strand, within DVU0539at 610.293 kb on - strand, within DVU0539at 610.340 kb on + strand, within DVU0539at 610.419 kb on + strand, within DVU0539at 610.427 kb on - strand, within DVU0539at 610.429 kb on - strand, within DVU0539at 610.429 kb on - strand, within DVU0539at 610.449 kb on + strand, within DVU0539at 610.451 kb on + strand, within DVU0539at 610.606 kb on - strand, within DVU0539at 610.617 kb on - strand, within DVU0539at 610.676 kb on + strand, within DVU0539at 610.745 kb on - strand, within DVU0539at 610.745 kb on - strand, within DVU0539at 610.782 kb on + strand, within DVU0539at 610.782 kb on + strand, within DVU0539at 610.790 kb on - strand, within DVU0539at 610.790 kb on - strand, within DVU0539at 610.790 kb on - strand, within DVU0539at 610.799 kb on - strand, within DVU0539at 610.828 kb on + strand, within DVU0539at 610.842 kb on + strand, within DVU0539at 610.850 kb on - strand, within DVU0539at 610.909 kb on - strand, within DVU0539at 610.909 kb on - strand, within DVU0539at 610.928 kb on + strand, within DVU0539at 610.938 kb on + strand, within DVU0539at 610.938 kb on + strand, within DVU0539at 610.941 kb on - strand, within DVU0539at 610.941 kb on - strand, within DVU0539at 610.946 kb on - strand, within DVU0539at 610.972 kb on + strand, within DVU0539at 611.127 kb on - strand, within DVU0539at 611.176 kb on + strand, within DVU0539at 611.176 kb on + strand, within DVU0539at 611.184 kb on - strand, within DVU0539at 611.209 kb on + strand, within DVU0539at 611.226 kb on + strand, within DVU0539at 611.226 kb on + strand, within DVU0539at 611.245 kb on + strand, within DVU0539at 611.285 kb on - strand, within DVU0539at 611.303 kb on + strand, within DVU0539at 611.303 kb on + strand, within DVU0539at 611.311 kb on - strand, within DVU0539at 611.352 kb on - strandat 611.366 kb on + strandat 611.425 kb on + strandat 611.565 kb on + strandat 611.565 kb on + strandat 611.571 kb on - strandat 611.573 kb on - strandat 611.591 kb on - strandat 611.609 kb on + strandat 611.659 kb on - strandat 611.677 kb on - strandat 611.739 kb on - strand, within DVU0540at 611.740 kb on - strand, within DVU0540at 611.753 kb on + strand, within DVU0540at 611.761 kb on - strand, within DVU0540at 611.761 kb on - strand, within DVU0540at 611.761 kb on - strand, within DVU0540at 611.768 kb on + strand, within DVU0540at 611.776 kb on - strand, within DVU0540at 611.776 kb on - strand, within DVU0540at 611.778 kb on + strand, within DVU0540at 611.778 kb on + strand, within DVU0540at 611.786 kb on - strand, within DVU0540at 611.786 kb on - strand, within DVU0540at 611.786 kb on - strand, within DVU0540at 611.796 kb on - strand, within DVU0540at 611.810 kb on + strand, within DVU0540at 611.829 kb on - strand, within DVU0540at 611.872 kb on + strand, within DVU0540at 611.903 kb on - strand, within DVU0540at 611.917 kb on + strand, within DVU0540at 611.917 kb on + strand, within DVU0540at 611.926 kb on - strand, within DVU0540at 611.961 kb on + strand, within DVU0540at 611.991 kb on - strand, within DVU0540at 612.040 kb on + strand, within DVU0540at 612.091 kb on + strand, within DVU0540at 612.099 kb on + strand, within DVU0540at 612.099 kb on - strand, within DVU0540at 612.099 kb on - strand, within DVU0540at 612.175 kb on - strand, within DVU0540at 612.214 kb on + strand, within DVU0540at 612.225 kb on + strand, within DVU0540at 612.269 kb on - strand, within DVU0540at 612.293 kb on + strand, within DVU0540at 612.293 kb on + strand, within DVU0540at 612.293 kb on + strand, within DVU0540at 612.301 kb on - strand, within DVU0540at 612.385 kb on + strand, within DVU0540at 612.393 kb on + strand, within DVU0540at 612.447 kb on - strand, within DVU0540

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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609,136 + +0.3
609,175 + -0.9
609,175 + -1.0
609,207 + -0.8
609,215 - -1.7
609,297 - -0.6
609,348 + DVU0538 0.13 -0.1
609,348 + DVU0538 0.13 +1.3
609,356 - DVU0538 0.14 +0.0
609,410 + DVU0538 0.21 -0.4
609,410 + DVU0538 0.21 +2.3
609,423 + DVU0538 0.23 +1.2
609,541 - DVU0538 0.38 -0.3
609,582 - DVU0538 0.43 -0.2
609,600 - DVU0538 0.45 -0.3
609,600 - DVU0538 0.45 -0.8
609,622 + DVU0538 0.48 +0.4
609,632 - DVU0538 0.49 -0.6
609,655 - DVU0538 0.52 -0.2
609,697 - DVU0538 0.58 -0.0
609,733 + DVU0538 0.62 +0.6
609,757 + DVU0538 0.65 -0.6
609,798 + DVU0538 0.70 -0.8
609,824 - DVU0538 0.74 -0.5
609,824 - DVU0538 0.74 -0.3
609,873 - DVU0538 0.80 -1.1
609,913 + DVU0538 0.85 -0.2
610,102 - +0.0
610,177 - +1.3
610,251 + DVU0539 0.14 -0.6
610,293 - DVU0539 0.17 -0.2
610,340 + DVU0539 0.21 -0.5
610,419 + DVU0539 0.26 +0.3
610,427 - DVU0539 0.27 -0.8
610,429 - DVU0539 0.27 -0.4
610,429 - DVU0539 0.27 -0.3
610,449 + DVU0539 0.28 -0.5
610,451 + DVU0539 0.29 -0.5
610,606 - DVU0539 0.40 -1.0
610,617 - DVU0539 0.40 -0.4
610,676 + DVU0539 0.45 -0.4
610,745 - DVU0539 0.50 -0.0
610,745 - DVU0539 0.50 +1.6
610,782 + DVU0539 0.52 -0.3
610,782 + DVU0539 0.52 -0.0
610,790 - DVU0539 0.53 -1.3
610,790 - DVU0539 0.53 +0.3
610,790 - DVU0539 0.53 +0.4
610,799 - DVU0539 0.53 -0.5
610,828 + DVU0539 0.55 -0.5
610,842 + DVU0539 0.56 -0.4
610,850 - DVU0539 0.57 +0.5
610,909 - DVU0539 0.61 +0.1
610,909 - DVU0539 0.61 -0.2
610,928 + DVU0539 0.63 -0.7
610,938 + DVU0539 0.63 -0.4
610,938 + DVU0539 0.63 -1.1
610,941 - DVU0539 0.64 -0.3
610,941 - DVU0539 0.64 -0.8
610,946 - DVU0539 0.64 -0.5
610,972 + DVU0539 0.66 -0.7
611,127 - DVU0539 0.77 -0.2
611,176 + DVU0539 0.80 -1.0
611,176 + DVU0539 0.80 -2.0
611,184 - DVU0539 0.81 +0.2
611,209 + DVU0539 0.83 +0.7
611,226 + DVU0539 0.84 +1.6
611,226 + DVU0539 0.84 -0.1
611,245 + DVU0539 0.85 -1.4
611,285 - DVU0539 0.88 -0.6
611,303 + DVU0539 0.89 -0.8
611,303 + DVU0539 0.89 -0.7
611,311 - DVU0539 0.90 +1.0
611,352 - -0.0
611,366 + -1.3
611,425 + +0.3
611,565 + +0.1
611,565 + -1.0
611,571 - -0.3
611,573 - -0.6
611,591 - -0.1
611,609 + -0.5
611,659 - +0.6
611,677 - -0.9
611,739 - DVU0540 0.13 -0.4
611,740 - DVU0540 0.13 -0.4
611,753 + DVU0540 0.13 -2.0
611,761 - DVU0540 0.13 -0.6
611,761 - DVU0540 0.13 -0.5
611,761 - DVU0540 0.13 -1.5
611,768 + DVU0540 0.14 -0.7
611,776 - DVU0540 0.14 +0.5
611,776 - DVU0540 0.14 -0.7
611,778 + DVU0540 0.14 +0.1
611,778 + DVU0540 0.14 -1.4
611,786 - DVU0540 0.15 -1.1
611,786 - DVU0540 0.15 -0.8
611,786 - DVU0540 0.15 -0.9
611,796 - DVU0540 0.15 +1.1
611,810 + DVU0540 0.16 -1.5
611,829 - DVU0540 0.16 -0.2
611,872 + DVU0540 0.18 +0.3
611,903 - DVU0540 0.19 -0.8
611,917 + DVU0540 0.20 -0.0
611,917 + DVU0540 0.20 -0.1
611,926 - DVU0540 0.20 -0.3
611,961 + DVU0540 0.22 -0.7
611,991 - DVU0540 0.23 +0.4
612,040 + DVU0540 0.25 +0.5
612,091 + DVU0540 0.27 -0.4
612,099 + DVU0540 0.27 +0.1
612,099 - DVU0540 0.27 -0.8
612,099 - DVU0540 0.27 +1.8
612,175 - DVU0540 0.31 -1.0
612,214 + DVU0540 0.32 +1.4
612,225 + DVU0540 0.33 -0.4
612,269 - DVU0540 0.35 +1.1
612,293 + DVU0540 0.36 -0.3
612,293 + DVU0540 0.36 +0.1
612,293 + DVU0540 0.36 -0.8
612,301 - DVU0540 0.36 -0.1
612,385 + DVU0540 0.39 -0.2
612,393 + DVU0540 0.40 -0.3
612,447 - DVU0540 0.42 -0.6

Or see this region's nucleotide sequence