Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hmcA and DVU0538 are separated by 389 nucleotides DVU0538 and DVU0539 are separated by 17 nucleotides
DVU0536: hmcA - HmcA; high-molecular-weight cytochrome c (voordouw), at 607,171 to 608,853
hmcA
DVU0538: DVU0538 - AP endonuclease, family 2 (TIGR), at 609,243 to 610,031
DVU0538
DVU0539: DVU0539 - sigma-54 dependent DNA-binding response regulator (TIGR), at 610,049 to 611,452
DVU0539
Position (kb) 609
610
611 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 608.546 kb on + strand, within hmcA at 608.554 kb on - strand, within hmcA at 608.572 kb on + strand, within hmcA at 608.575 kb on - strand, within hmcA at 608.580 kb on - strand, within hmcA at 608.580 kb on - strand, within hmcA at 608.580 kb on - strand, within hmcA at 608.707 kb on - strand at 608.710 kb on + strand at 608.710 kb on + strand at 608.757 kb on - strand at 608.780 kb on - strand at 608.788 kb on - strand at 608.790 kb on - strand at 608.798 kb on + strand at 608.839 kb on - strand at 608.849 kb on + strand at 608.849 kb on - strand at 608.944 kb on - strand at 608.946 kb on - strand at 609.001 kb on + strand at 609.136 kb on + strand at 609.175 kb on + strand at 609.175 kb on + strand at 609.207 kb on + strand at 609.215 kb on - strand at 609.297 kb on - strand at 609.348 kb on + strand, within DVU0538 at 609.348 kb on + strand, within DVU0538 at 609.356 kb on - strand, within DVU0538 at 609.410 kb on + strand, within DVU0538 at 609.410 kb on + strand, within DVU0538 at 609.423 kb on + strand, within DVU0538 at 609.541 kb on - strand, within DVU0538 at 609.582 kb on - strand, within DVU0538 at 609.600 kb on - strand, within DVU0538 at 609.600 kb on - strand, within DVU0538 at 609.622 kb on + strand, within DVU0538 at 609.632 kb on - strand, within DVU0538 at 609.655 kb on - strand, within DVU0538 at 609.697 kb on - strand, within DVU0538 at 609.733 kb on + strand, within DVU0538 at 609.757 kb on + strand, within DVU0538 at 609.798 kb on + strand, within DVU0538 at 609.824 kb on - strand, within DVU0538 at 609.824 kb on - strand, within DVU0538 at 609.873 kb on - strand, within DVU0538 at 609.913 kb on + strand, within DVU0538 at 610.102 kb on - strand at 610.177 kb on - strand at 610.251 kb on + strand, within DVU0539 at 610.293 kb on - strand, within DVU0539 at 610.340 kb on + strand, within DVU0539 at 610.419 kb on + strand, within DVU0539 at 610.427 kb on - strand, within DVU0539 at 610.429 kb on - strand, within DVU0539 at 610.429 kb on - strand, within DVU0539 at 610.449 kb on + strand, within DVU0539 at 610.451 kb on + strand, within DVU0539 at 610.606 kb on - strand, within DVU0539 at 610.617 kb on - strand, within DVU0539 at 610.676 kb on + strand, within DVU0539 at 610.745 kb on - strand, within DVU0539 at 610.745 kb on - strand, within DVU0539 at 610.782 kb on + strand, within DVU0539 at 610.782 kb on + strand, within DVU0539 at 610.790 kb on - strand, within DVU0539 at 610.790 kb on - strand, within DVU0539 at 610.790 kb on - strand, within DVU0539 at 610.799 kb on - strand, within DVU0539 at 610.828 kb on + strand, within DVU0539 at 610.842 kb on + strand, within DVU0539 at 610.850 kb on - strand, within DVU0539 at 610.909 kb on - strand, within DVU0539 at 610.909 kb on - strand, within DVU0539 at 610.928 kb on + strand, within DVU0539 at 610.938 kb on + strand, within DVU0539 at 610.938 kb on + strand, within DVU0539 at 610.941 kb on - strand, within DVU0539 at 610.941 kb on - strand, within DVU0539 at 610.946 kb on - strand, within DVU0539 at 610.972 kb on + strand, within DVU0539
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 608,546 + hmcA DVU0536 0.82 -0.9 608,554 - hmcA DVU0536 0.82 -1.1 608,572 + hmcA DVU0536 0.83 -1.8 608,575 - hmcA DVU0536 0.83 -1.9 608,580 - hmcA DVU0536 0.84 +0.8 608,580 - hmcA DVU0536 0.84 -0.3 608,580 - hmcA DVU0536 0.84 -1.6 608,707 - -2.1 608,710 + -1.0 608,710 + -2.0 608,757 - -4.8 608,780 - -0.7 608,788 - -2.9 608,790 - -0.6 608,798 + -1.0 608,839 - +2.1 608,849 + -0.6 608,849 - -2.0 608,944 - +0.2 608,946 - -0.8 609,001 + +0.4 609,136 + +0.3 609,175 + -0.9 609,175 + -1.0 609,207 + -0.8 609,215 - -1.7 609,297 - -0.6 609,348 + DVU0538 0.13 -0.1 609,348 + DVU0538 0.13 +1.3 609,356 - DVU0538 0.14 +0.0 609,410 + DVU0538 0.21 -0.4 609,410 + DVU0538 0.21 +2.3 609,423 + DVU0538 0.23 +1.2 609,541 - DVU0538 0.38 -0.3 609,582 - DVU0538 0.43 -0.2 609,600 - DVU0538 0.45 -0.3 609,600 - DVU0538 0.45 -0.8 609,622 + DVU0538 0.48 +0.4 609,632 - DVU0538 0.49 -0.6 609,655 - DVU0538 0.52 -0.2 609,697 - DVU0538 0.58 -0.0 609,733 + DVU0538 0.62 +0.6 609,757 + DVU0538 0.65 -0.6 609,798 + DVU0538 0.70 -0.8 609,824 - DVU0538 0.74 -0.5 609,824 - DVU0538 0.74 -0.3 609,873 - DVU0538 0.80 -1.1 609,913 + DVU0538 0.85 -0.2 610,102 - +0.0 610,177 - +1.3 610,251 + DVU0539 0.14 -0.6 610,293 - DVU0539 0.17 -0.2 610,340 + DVU0539 0.21 -0.5 610,419 + DVU0539 0.26 +0.3 610,427 - DVU0539 0.27 -0.8 610,429 - DVU0539 0.27 -0.4 610,429 - DVU0539 0.27 -0.3 610,449 + DVU0539 0.28 -0.5 610,451 + DVU0539 0.29 -0.5 610,606 - DVU0539 0.40 -1.0 610,617 - DVU0539 0.40 -0.4 610,676 + DVU0539 0.45 -0.4 610,745 - DVU0539 0.50 -0.0 610,745 - DVU0539 0.50 +1.6 610,782 + DVU0539 0.52 -0.3 610,782 + DVU0539 0.52 -0.0 610,790 - DVU0539 0.53 -1.3 610,790 - DVU0539 0.53 +0.3 610,790 - DVU0539 0.53 +0.4 610,799 - DVU0539 0.53 -0.5 610,828 + DVU0539 0.55 -0.5 610,842 + DVU0539 0.56 -0.4 610,850 - DVU0539 0.57 +0.5 610,909 - DVU0539 0.61 +0.1 610,909 - DVU0539 0.61 -0.2 610,928 + DVU0539 0.63 -0.7 610,938 + DVU0539 0.63 -0.4 610,938 + DVU0539 0.63 -1.1 610,941 - DVU0539 0.64 -0.3 610,941 - DVU0539 0.64 -0.8 610,946 - DVU0539 0.64 -0.5 610,972 + DVU0539 0.66 -0.7
Or see this region's nucleotide sequence