Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0517 and DVU0518 are separated by 23 nucleotides DVU0518 and DVU0519 overlap by 1 nucleotides DVU0519 and DVU0520 are separated by 11 nucleotides
DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026
DVU0517
DVU0518: DVU0518 - hypothetical protein (TIGR), at 592,050 to 592,514
DVU0518
DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610
DVU0519
DVU0520: DVU0520 - flagellar hook-associated protein FlgL, putative (TIGR), at 594,622 to 596,193
DVU0520
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 591.561 kb on - strand, within DVU0517 at 592.036 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.091 kb on + strand at 592.091 kb on + strand at 592.099 kb on - strand, within DVU0518 at 592.099 kb on - strand, within DVU0518 at 592.176 kb on - strand, within DVU0518 at 592.231 kb on - strand, within DVU0518 at 592.251 kb on + strand, within DVU0518 at 592.281 kb on + strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.306 kb on - strand, within DVU0518 at 592.329 kb on + strand, within DVU0518 at 592.334 kb on + strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.342 kb on - strand, within DVU0518 at 592.363 kb on - strand, within DVU0518 at 592.372 kb on + strand, within DVU0518 at 592.376 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.539 kb on - strand at 592.539 kb on - strand at 592.574 kb on + strand at 592.639 kb on - strand at 592.791 kb on - strand, within DVU0519 at 592.847 kb on + strand, within DVU0519 at 592.950 kb on - strand, within DVU0519 at 592.968 kb on + strand, within DVU0519 at 593.076 kb on - strand, within DVU0519 at 593.076 kb on - strand, within DVU0519 at 593.092 kb on - strand, within DVU0519 at 593.098 kb on - strand, within DVU0519 at 593.101 kb on + strand, within DVU0519 at 593.111 kb on + strand, within DVU0519 at 593.196 kb on - strand, within DVU0519 at 593.198 kb on + strand, within DVU0519 at 593.198 kb on + strand, within DVU0519 at 593.249 kb on - strand, within DVU0519 at 593.249 kb on - strand, within DVU0519 at 593.276 kb on - strand, within DVU0519 at 593.317 kb on - strand, within DVU0519 at 593.342 kb on - strand, within DVU0519 at 593.346 kb on + strand, within DVU0519 at 593.346 kb on + strand, within DVU0519 at 593.346 kb on + strand, within DVU0519 at 593.354 kb on + strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.381 kb on + strand, within DVU0519 at 593.391 kb on - strand, within DVU0519 at 593.454 kb on - strand, within DVU0519 at 593.454 kb on - strand, within DVU0519 at 593.454 kb on - strand, within DVU0519 at 593.456 kb on + strand, within DVU0519 at 593.464 kb on - strand, within DVU0519 at 593.465 kb on + strand, within DVU0519 at 593.472 kb on + strand, within DVU0519 at 593.482 kb on + strand, within DVU0519 at 593.482 kb on + strand, within DVU0519 at 593.569 kb on + strand, within DVU0519 at 593.577 kb on - strand, within DVU0519 at 593.603 kb on - strand, within DVU0519 at 593.617 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.689 kb on + strand, within DVU0519 at 593.735 kb on + strand, within DVU0519 at 593.736 kb on + strand, within DVU0519 at 593.808 kb on + strand, within DVU0519 at 593.818 kb on + strand, within DVU0519 at 593.826 kb on - strand, within DVU0519 at 593.997 kb on + strand, within DVU0519 at 594.132 kb on + strand, within DVU0519 at 594.138 kb on - strand, within DVU0519 at 594.163 kb on - strand, within DVU0519 at 594.192 kb on + strand, within DVU0519 at 594.200 kb on - strand, within DVU0519 at 594.248 kb on - strand, within DVU0519 at 594.288 kb on + strand, within DVU0519 at 594.305 kb on + strand, within DVU0519 at 594.381 kb on + strand, within DVU0519 at 594.390 kb on + strand, within DVU0519 at 594.467 kb on - strand at 594.557 kb on + strand at 594.597 kb on + strand at 594.797 kb on - strand, within DVU0520 at 594.811 kb on - strand, within DVU0520 at 594.824 kb on - strand, within DVU0520 at 594.826 kb on + strand, within DVU0520 at 594.826 kb on + strand, within DVU0520 at 594.834 kb on - strand, within DVU0520 at 594.840 kb on - strand, within DVU0520 at 594.865 kb on + strand, within DVU0520 at 594.865 kb on + strand, within DVU0520 at 594.869 kb on + strand, within DVU0520 at 594.875 kb on - strand, within DVU0520 at 594.888 kb on + strand, within DVU0520 at 594.888 kb on + strand, within DVU0520 at 594.890 kb on + strand, within DVU0520 at 594.896 kb on - strand, within DVU0520 at 594.896 kb on - strand, within DVU0520 at 594.929 kb on + strand, within DVU0520 at 594.979 kb on - strand, within DVU0520 at 595.029 kb on - strand, within DVU0520 at 595.093 kb on - strand, within DVU0520 at 595.289 kb on + strand, within DVU0520 at 595.289 kb on + strand, within DVU0520 at 595.292 kb on + strand, within DVU0520 at 595.301 kb on + strand, within DVU0520 at 595.303 kb on - strand, within DVU0520 at 595.337 kb on - strand, within DVU0520 at 595.357 kb on - strand, within DVU0520 at 595.389 kb on + strand, within DVU0520 at 595.396 kb on + strand, within DVU0520 at 595.466 kb on + strand, within DVU0520 at 595.476 kb on - strand, within DVU0520 at 595.510 kb on - strand, within DVU0520 at 595.564 kb on + strand, within DVU0520
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 591,561 - DVU0517 0.75 +0.1 592,036 + +0.9 592,050 + +0.3 592,050 + -2.5 592,091 + -1.0 592,091 + -2.3 592,099 - DVU0518 0.11 -0.6 592,099 - DVU0518 0.11 -2.0 592,176 - DVU0518 0.27 -1.2 592,231 - DVU0518 0.39 -1.9 592,251 + DVU0518 0.43 +0.6 592,281 + DVU0518 0.50 -1.5 592,289 - DVU0518 0.51 -1.4 592,289 - DVU0518 0.51 -2.1 592,289 - DVU0518 0.51 -1.8 592,306 - DVU0518 0.55 -0.7 592,329 + DVU0518 0.60 -1.3 592,334 + DVU0518 0.61 -1.3 592,337 - DVU0518 0.62 -1.8 592,337 - DVU0518 0.62 -1.1 592,342 - DVU0518 0.63 -2.4 592,363 - DVU0518 0.67 +1.8 592,372 + DVU0518 0.69 -1.5 592,376 + DVU0518 0.70 -0.4 592,433 + DVU0518 0.82 -2.5 592,433 + DVU0518 0.82 -0.8 592,539 - -2.3 592,539 - -1.9 592,574 + -1.3 592,639 - -1.8 592,791 - DVU0519 0.13 -0.9 592,847 + DVU0519 0.16 -0.8 592,950 - DVU0519 0.21 -1.3 592,968 + DVU0519 0.22 -1.1 593,076 - DVU0519 0.27 -2.5 593,076 - DVU0519 0.27 -1.7 593,092 - DVU0519 0.28 -2.0 593,098 - DVU0519 0.28 +0.8 593,101 + DVU0519 0.28 -1.6 593,111 + DVU0519 0.28 -1.0 593,196 - DVU0519 0.33 -2.1 593,198 + DVU0519 0.33 -0.9 593,198 + DVU0519 0.33 -1.5 593,249 - DVU0519 0.35 -1.7 593,249 - DVU0519 0.35 -1.2 593,276 - DVU0519 0.36 +0.3 593,317 - DVU0519 0.38 -1.2 593,342 - DVU0519 0.39 +0.6 593,346 + DVU0519 0.40 -1.3 593,346 + DVU0519 0.40 -1.6 593,346 + DVU0519 0.40 +0.1 593,354 + DVU0519 0.40 -0.0 593,354 - DVU0519 0.40 -0.2 593,354 - DVU0519 0.40 -1.3 593,354 - DVU0519 0.40 -2.8 593,354 - DVU0519 0.40 -2.2 593,381 + DVU0519 0.41 -1.4 593,391 - DVU0519 0.42 +1.6 593,454 - DVU0519 0.45 +0.3 593,454 - DVU0519 0.45 -0.0 593,454 - DVU0519 0.45 -1.2 593,456 + DVU0519 0.45 -1.2 593,464 - DVU0519 0.45 -1.0 593,465 + DVU0519 0.45 -0.3 593,472 + DVU0519 0.46 +0.8 593,482 + DVU0519 0.46 +0.2 593,482 + DVU0519 0.46 -0.6 593,569 + DVU0519 0.50 -1.8 593,577 - DVU0519 0.51 -1.7 593,603 - DVU0519 0.52 -0.6 593,617 - DVU0519 0.53 -1.8 593,640 - DVU0519 0.54 -1.4 593,640 - DVU0519 0.54 -2.1 593,640 - DVU0519 0.54 -2.1 593,640 - DVU0519 0.54 -2.5 593,640 - DVU0519 0.54 -0.2 593,689 + DVU0519 0.56 -1.9 593,735 + DVU0519 0.58 -1.7 593,736 + DVU0519 0.58 -1.6 593,808 + DVU0519 0.62 -1.5 593,818 + DVU0519 0.62 -2.4 593,826 - DVU0519 0.63 -1.3 593,997 + DVU0519 0.71 -1.3 594,132 + DVU0519 0.77 -0.3 594,138 - DVU0519 0.77 -2.2 594,163 - DVU0519 0.79 +0.6 594,192 + DVU0519 0.80 -0.7 594,200 - DVU0519 0.80 +0.1 594,248 - DVU0519 0.83 -2.1 594,288 + DVU0519 0.85 -2.4 594,305 + DVU0519 0.85 -1.3 594,381 + DVU0519 0.89 -1.2 594,390 + DVU0519 0.89 -2.5 594,467 - -2.2 594,557 + -1.9 594,597 + +1.6 594,797 - DVU0520 0.11 +0.3 594,811 - DVU0520 0.12 -1.7 594,824 - DVU0520 0.13 -1.0 594,826 + DVU0520 0.13 -0.2 594,826 + DVU0520 0.13 -1.1 594,834 - DVU0520 0.13 -2.7 594,840 - DVU0520 0.14 -2.7 594,865 + DVU0520 0.15 -1.8 594,865 + DVU0520 0.15 -2.1 594,869 + DVU0520 0.16 +2.1 594,875 - DVU0520 0.16 -2.9 594,888 + DVU0520 0.17 -4.7 594,888 + DVU0520 0.17 -2.0 594,890 + DVU0520 0.17 -2.5 594,896 - DVU0520 0.17 -2.8 594,896 - DVU0520 0.17 -2.6 594,929 + DVU0520 0.20 -0.0 594,979 - DVU0520 0.23 -2.5 595,029 - DVU0520 0.26 -3.1 595,093 - DVU0520 0.30 -1.7 595,289 + DVU0520 0.42 -0.8 595,289 + DVU0520 0.42 -2.6 595,292 + DVU0520 0.43 +3.1 595,301 + DVU0520 0.43 -1.0 595,303 - DVU0520 0.43 -0.3 595,337 - DVU0520 0.45 -2.1 595,357 - DVU0520 0.47 -2.5 595,389 + DVU0520 0.49 -2.3 595,396 + DVU0520 0.49 -2.9 595,466 + DVU0520 0.54 -2.4 595,476 - DVU0520 0.54 +0.8 595,510 - DVU0520 0.56 -2.4 595,564 + DVU0520 0.60 -2.3
Or see this region's nucleotide sequence