Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0437 and DVU0438 overlap by 4 nucleotides DVU0438 and DVU0439 are separated by 34 nucleotides DVU0439 and DVU0440 are separated by 468 nucleotides
DVU0437: DVU0437 - efflux transporter, RND family, MFP subunit (TIGR), at 490,755 to 492,215
DVU0437
DVU0438: DVU0438 - AcrB/AcrD/AcrF family protein (TIGR), at 492,212 to 495,337
DVU0438
DVU0439: DVU0439 - YCII-related domain protein (TIGR), at 495,372 to 495,662
DVU0439
DVU0440: DVU0440 - conserved hypothetical protein (TIGR), at 496,131 to 497,462
DVU0440
Position (kb) 492
493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 491.257 kb on - strand, within DVU0437 at 491.350 kb on + strand, within DVU0437 at 491.350 kb on + strand, within DVU0437 at 491.350 kb on + strand, within DVU0437 at 491.358 kb on - strand, within DVU0437 at 491.361 kb on + strand, within DVU0437 at 491.369 kb on - strand, within DVU0437 at 491.379 kb on - strand, within DVU0437 at 491.382 kb on - strand, within DVU0437 at 491.384 kb on - strand, within DVU0437 at 491.423 kb on + strand, within DVU0437 at 491.470 kb on - strand, within DVU0437 at 491.548 kb on - strand, within DVU0437 at 491.613 kb on + strand, within DVU0437 at 491.619 kb on - strand, within DVU0437 at 491.634 kb on + strand, within DVU0437 at 491.661 kb on + strand, within DVU0437 at 491.704 kb on + strand, within DVU0437 at 491.722 kb on + strand, within DVU0437 at 491.753 kb on + strand, within DVU0437 at 491.801 kb on - strand, within DVU0437 at 491.805 kb on + strand, within DVU0437 at 491.812 kb on + strand, within DVU0437 at 491.837 kb on - strand, within DVU0437 at 491.886 kb on + strand, within DVU0437 at 491.896 kb on + strand, within DVU0437 at 491.958 kb on + strand, within DVU0437 at 492.070 kb on + strand at 492.079 kb on - strand at 492.180 kb on - strand at 492.182 kb on + strand at 492.188 kb on + strand at 492.257 kb on - strand at 492.274 kb on + strand at 492.342 kb on + strand at 492.390 kb on - strand at 492.452 kb on + strand at 492.532 kb on - strand, within DVU0438 at 492.578 kb on - strand, within DVU0438 at 492.583 kb on - strand, within DVU0438 at 492.626 kb on + strand, within DVU0438 at 492.654 kb on + strand, within DVU0438 at 492.662 kb on - strand, within DVU0438 at 492.728 kb on + strand, within DVU0438 at 492.754 kb on + strand, within DVU0438 at 492.757 kb on - strand, within DVU0438 at 492.757 kb on - strand, within DVU0438 at 492.773 kb on - strand, within DVU0438 at 492.805 kb on - strand, within DVU0438 at 492.854 kb on - strand, within DVU0438 at 492.944 kb on + strand, within DVU0438 at 492.983 kb on + strand, within DVU0438 at 492.991 kb on - strand, within DVU0438 at 493.003 kb on - strand, within DVU0438 at 493.005 kb on + strand, within DVU0438 at 493.010 kb on + strand, within DVU0438 at 493.013 kb on - strand, within DVU0438 at 493.068 kb on - strand, within DVU0438 at 493.081 kb on + strand, within DVU0438 at 493.099 kb on + strand, within DVU0438 at 493.131 kb on - strand, within DVU0438 at 493.182 kb on - strand, within DVU0438 at 493.211 kb on + strand, within DVU0438 at 493.218 kb on - strand, within DVU0438 at 493.240 kb on - strand, within DVU0438 at 493.283 kb on - strand, within DVU0438 at 493.299 kb on + strand, within DVU0438 at 493.309 kb on + strand, within DVU0438 at 493.360 kb on - strand, within DVU0438 at 493.367 kb on - strand, within DVU0438 at 493.390 kb on - strand, within DVU0438 at 493.432 kb on + strand, within DVU0438 at 493.440 kb on - strand, within DVU0438 at 493.459 kb on + strand, within DVU0438 at 493.467 kb on - strand, within DVU0438 at 493.495 kb on + strand, within DVU0438 at 493.500 kb on + strand, within DVU0438 at 493.513 kb on - strand, within DVU0438 at 493.519 kb on + strand, within DVU0438 at 493.552 kb on - strand, within DVU0438 at 493.569 kb on - strand, within DVU0438 at 493.614 kb on - strand, within DVU0438 at 493.656 kb on + strand, within DVU0438 at 493.656 kb on + strand, within DVU0438 at 493.656 kb on + strand, within DVU0438 at 493.664 kb on - strand, within DVU0438 at 493.666 kb on - strand, within DVU0438 at 493.683 kb on - strand, within DVU0438 at 493.718 kb on - strand, within DVU0438 at 493.722 kb on - strand, within DVU0438 at 493.722 kb on - strand, within DVU0438 at 493.722 kb on - strand, within DVU0438 at 493.722 kb on - strand, within DVU0438 at 493.722 kb on - strand, within DVU0438 at 493.722 kb on - strand, within DVU0438 at 493.758 kb on - strand, within DVU0438 at 493.813 kb on + strand, within DVU0438 at 493.866 kb on - strand, within DVU0438 at 493.919 kb on - strand, within DVU0438 at 493.929 kb on + strand, within DVU0438 at 493.937 kb on - strand, within DVU0438 at 493.951 kb on + strand, within DVU0438 at 493.959 kb on - strand, within DVU0438 at 493.966 kb on - strand, within DVU0438 at 494.137 kb on - strand, within DVU0438 at 494.175 kb on + strand, within DVU0438 at 494.175 kb on + strand, within DVU0438 at 494.183 kb on - strand, within DVU0438 at 494.210 kb on + strand, within DVU0438 at 494.222 kb on + strand, within DVU0438 at 494.229 kb on + strand, within DVU0438 at 494.246 kb on - strand, within DVU0438 at 494.265 kb on + strand, within DVU0438 at 494.355 kb on + strand, within DVU0438 at 494.367 kb on - strand, within DVU0438 at 494.434 kb on + strand, within DVU0438 at 494.443 kb on - strand, within DVU0438 at 494.464 kb on - strand, within DVU0438 at 494.483 kb on - strand, within DVU0438 at 494.579 kb on - strand, within DVU0438 at 494.623 kb on + strand, within DVU0438 at 494.639 kb on - strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.643 kb on + strand, within DVU0438 at 494.651 kb on - strand, within DVU0438 at 494.651 kb on - strand, within DVU0438 at 494.651 kb on - strand, within DVU0438 at 494.698 kb on - strand, within DVU0438 at 494.703 kb on - strand, within DVU0438 at 494.722 kb on - strand, within DVU0438 at 494.750 kb on + strand, within DVU0438 at 494.757 kb on + strand, within DVU0438 at 494.771 kb on + strand, within DVU0438 at 494.776 kb on + strand, within DVU0438 at 494.784 kb on - strand, within DVU0438 at 494.784 kb on - strand, within DVU0438 at 494.794 kb on + strand, within DVU0438 at 494.802 kb on - strand, within DVU0438 at 494.852 kb on - strand, within DVU0438 at 494.866 kb on + strand, within DVU0438 at 494.886 kb on - strand, within DVU0438 at 494.917 kb on - strand, within DVU0438 at 494.936 kb on - strand, within DVU0438 at 494.943 kb on - strand, within DVU0438 at 495.041 kb on - strand at 495.041 kb on - strand at 495.069 kb on - strand at 495.131 kb on + strand at 495.190 kb on - strand at 495.220 kb on + strand at 495.235 kb on + strand at 495.243 kb on - strand at 495.243 kb on - strand at 495.243 kb on - strand at 495.308 kb on + strand at 495.420 kb on + strand, within DVU0439 at 495.421 kb on - strand, within DVU0439 at 495.484 kb on - strand, within DVU0439 at 495.496 kb on + strand, within DVU0439 at 495.515 kb on - strand, within DVU0439 at 495.581 kb on + strand, within DVU0439 at 495.581 kb on + strand, within DVU0439 at 495.866 kb on - strand at 495.918 kb on + strand at 495.921 kb on + strand at 495.949 kb on + strand at 495.957 kb on - strand at 496.018 kb on + strand at 496.023 kb on + strand at 496.026 kb on - strand at 496.031 kb on - strand at 496.031 kb on - strand at 496.180 kb on + strand at 496.183 kb on - strand at 496.194 kb on - strand at 496.199 kb on + strand at 496.226 kb on + strand at 496.234 kb on - strand at 496.255 kb on - strand at 496.265 kb on + strand, within DVU0440 at 496.275 kb on + strand, within DVU0440 at 496.313 kb on + strand, within DVU0440
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 491,257 - DVU0437 0.34 -1.0 491,350 + DVU0437 0.41 +1.2 491,350 + DVU0437 0.41 -0.6 491,350 + DVU0437 0.41 +0.1 491,358 - DVU0437 0.41 +1.0 491,361 + DVU0437 0.41 -0.3 491,369 - DVU0437 0.42 -0.1 491,379 - DVU0437 0.43 +0.4 491,382 - DVU0437 0.43 +0.6 491,384 - DVU0437 0.43 +1.1 491,423 + DVU0437 0.46 -0.2 491,470 - DVU0437 0.49 +2.2 491,548 - DVU0437 0.54 +0.2 491,613 + DVU0437 0.59 -0.7 491,619 - DVU0437 0.59 +0.1 491,634 + DVU0437 0.60 +1.1 491,661 + DVU0437 0.62 +0.4 491,704 + DVU0437 0.65 +0.4 491,722 + DVU0437 0.66 +0.4 491,753 + DVU0437 0.68 +0.8 491,801 - DVU0437 0.72 +0.6 491,805 + DVU0437 0.72 +1.1 491,812 + DVU0437 0.72 -0.8 491,837 - DVU0437 0.74 +1.4 491,886 + DVU0437 0.77 +1.5 491,896 + DVU0437 0.78 +0.8 491,958 + DVU0437 0.82 +1.7 492,070 + +0.6 492,079 - +1.2 492,180 - +0.3 492,182 + -0.5 492,188 + -0.0 492,257 - -0.1 492,274 + +3.4 492,342 + +1.2 492,390 - +0.8 492,452 + -0.8 492,532 - DVU0438 0.10 +1.6 492,578 - DVU0438 0.12 +1.0 492,583 - DVU0438 0.12 +0.9 492,626 + DVU0438 0.13 +0.6 492,654 + DVU0438 0.14 +2.1 492,662 - DVU0438 0.14 +0.8 492,728 + DVU0438 0.17 +2.1 492,754 + DVU0438 0.17 +1.5 492,757 - DVU0438 0.17 +0.5 492,757 - DVU0438 0.17 -1.8 492,773 - DVU0438 0.18 +1.1 492,805 - DVU0438 0.19 +0.9 492,854 - DVU0438 0.21 +0.5 492,944 + DVU0438 0.23 +1.2 492,983 + DVU0438 0.25 +0.3 492,991 - DVU0438 0.25 +0.3 493,003 - DVU0438 0.25 +0.8 493,005 + DVU0438 0.25 -1.5 493,010 + DVU0438 0.26 +0.2 493,013 - DVU0438 0.26 -0.6 493,068 - DVU0438 0.27 +1.7 493,081 + DVU0438 0.28 +0.8 493,099 + DVU0438 0.28 +0.3 493,131 - DVU0438 0.29 +0.2 493,182 - DVU0438 0.31 +0.7 493,211 + DVU0438 0.32 +0.0 493,218 - DVU0438 0.32 +0.9 493,240 - DVU0438 0.33 +1.2 493,283 - DVU0438 0.34 +1.6 493,299 + DVU0438 0.35 -1.6 493,309 + DVU0438 0.35 +1.4 493,360 - DVU0438 0.37 +1.8 493,367 - DVU0438 0.37 +0.9 493,390 - DVU0438 0.38 +0.8 493,432 + DVU0438 0.39 +0.8 493,440 - DVU0438 0.39 +0.2 493,459 + DVU0438 0.40 -0.1 493,467 - DVU0438 0.40 +0.7 493,495 + DVU0438 0.41 +1.0 493,500 + DVU0438 0.41 +1.2 493,513 - DVU0438 0.42 +1.1 493,519 + DVU0438 0.42 +0.7 493,552 - DVU0438 0.43 +0.3 493,569 - DVU0438 0.43 +0.7 493,614 - DVU0438 0.45 +2.3 493,656 + DVU0438 0.46 +1.7 493,656 + DVU0438 0.46 +1.4 493,656 + DVU0438 0.46 +1.7 493,664 - DVU0438 0.46 -0.2 493,666 - DVU0438 0.47 +1.5 493,683 - DVU0438 0.47 +0.9 493,718 - DVU0438 0.48 +0.6 493,722 - DVU0438 0.48 +2.1 493,722 - DVU0438 0.48 +0.8 493,722 - DVU0438 0.48 +1.9 493,722 - DVU0438 0.48 +0.9 493,722 - DVU0438 0.48 +0.1 493,722 - DVU0438 0.48 +3.6 493,758 - DVU0438 0.49 -0.6 493,813 + DVU0438 0.51 +0.6 493,866 - DVU0438 0.53 +0.7 493,919 - DVU0438 0.55 -1.2 493,929 + DVU0438 0.55 +0.6 493,937 - DVU0438 0.55 +1.1 493,951 + DVU0438 0.56 +1.0 493,959 - DVU0438 0.56 +1.2 493,966 - DVU0438 0.56 +0.3 494,137 - DVU0438 0.62 +0.6 494,175 + DVU0438 0.63 +1.0 494,175 + DVU0438 0.63 +1.7 494,183 - DVU0438 0.63 +0.3 494,210 + DVU0438 0.64 +2.0 494,222 + DVU0438 0.64 +0.7 494,229 + DVU0438 0.65 -0.8 494,246 - DVU0438 0.65 +1.2 494,265 + DVU0438 0.66 -0.0 494,355 + DVU0438 0.69 +0.2 494,367 - DVU0438 0.69 +1.4 494,434 + DVU0438 0.71 +0.8 494,443 - DVU0438 0.71 -1.6 494,464 - DVU0438 0.72 +1.8 494,483 - DVU0438 0.73 +0.7 494,579 - DVU0438 0.76 -0.3 494,623 + DVU0438 0.77 +1.1 494,639 - DVU0438 0.78 +0.6 494,643 + DVU0438 0.78 +1.8 494,643 + DVU0438 0.78 +2.0 494,643 + DVU0438 0.78 -1.6 494,643 + DVU0438 0.78 +1.2 494,643 + DVU0438 0.78 +0.7 494,651 - DVU0438 0.78 +0.6 494,651 - DVU0438 0.78 +0.6 494,651 - DVU0438 0.78 +0.7 494,698 - DVU0438 0.80 +1.2 494,703 - DVU0438 0.80 +2.3 494,722 - DVU0438 0.80 +1.4 494,750 + DVU0438 0.81 +1.3 494,757 + DVU0438 0.81 +1.2 494,771 + DVU0438 0.82 +0.8 494,776 + DVU0438 0.82 +1.1 494,784 - DVU0438 0.82 -0.1 494,784 - DVU0438 0.82 -0.6 494,794 + DVU0438 0.83 +0.6 494,802 - DVU0438 0.83 +0.8 494,852 - DVU0438 0.84 +1.4 494,866 + DVU0438 0.85 +0.3 494,886 - DVU0438 0.86 +3.1 494,917 - DVU0438 0.87 +0.3 494,936 - DVU0438 0.87 +0.7 494,943 - DVU0438 0.87 +0.4 495,041 - +2.1 495,041 - +2.3 495,069 - +0.8 495,131 + +2.4 495,190 - -1.4 495,220 + -1.9 495,235 + +0.6 495,243 - +0.1 495,243 - +2.2 495,243 - +1.0 495,308 + +0.8 495,420 + DVU0439 0.16 -2.2 495,421 - DVU0439 0.17 -0.5 495,484 - DVU0439 0.38 +0.2 495,496 + DVU0439 0.43 -0.2 495,515 - DVU0439 0.49 +0.8 495,581 + DVU0439 0.72 -0.5 495,581 + DVU0439 0.72 -0.7 495,866 - +0.8 495,918 + -0.6 495,921 + +0.5 495,949 + +2.1 495,957 - -0.2 496,018 + -0.2 496,023 + -1.4 496,026 - -1.1 496,031 - +0.1 496,031 - -0.2 496,180 + -0.3 496,183 - -1.4 496,194 - -0.1 496,199 + -0.5 496,226 + +0.2 496,234 - +1.1 496,255 - -1.1 496,265 + DVU0440 0.10 +1.7 496,275 + DVU0440 0.11 +0.5 496,313 + DVU0440 0.14 +0.1
Or see this region's nucleotide sequence