Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0054

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0053 and DVU0054 are separated by 429 nucleotidesDVU0054 and ispH overlap by 4 nucleotidesispH and cheV-1 are separated by 40 nucleotides DVU0053: DVU0053 - sulfate permease, putative (TIGR), at 58,305 to 60,077 DVU0053 DVU0054: DVU0054 - dihydrouridine synthase family protein (TIGR), at 60,507 to 61,766 DVU0054 DVU0055: ispH - hydroxymethylbutenyl pyrophosphate reductase (TIGR), at 61,763 to 62,635 ispH DVU0056: cheV-1 - chemotaxis protein CheV (TIGR), at 62,676 to 63,629 cheV-1 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.526 kb on + strand, within DVU0053at 59.544 kb on - strand, within DVU0053at 59.544 kb on - strand, within DVU0053at 59.614 kb on + strand, within DVU0053at 59.635 kb on + strand, within DVU0053at 59.643 kb on - strand, within DVU0053at 59.767 kb on + strand, within DVU0053at 59.775 kb on - strand, within DVU0053at 59.775 kb on - strand, within DVU0053at 59.775 kb on - strand, within DVU0053at 59.789 kb on - strand, within DVU0053at 59.827 kb on + strand, within DVU0053at 59.829 kb on - strand, within DVU0053at 59.848 kb on + strand, within DVU0053at 59.856 kb on - strand, within DVU0053at 59.856 kb on - strand, within DVU0053at 59.927 kb on + strandat 59.927 kb on + strandat 59.927 kb on + strandat 59.935 kb on - strandat 59.935 kb on - strandat 59.935 kb on - strandat 59.935 kb on - strandat 59.940 kb on - strandat 59.987 kb on + strandat 60.043 kb on - strandat 60.049 kb on - strandat 60.066 kb on - strandat 60.071 kb on + strandat 60.071 kb on + strandat 60.079 kb on - strandat 60.142 kb on + strandat 60.267 kb on + strandat 60.267 kb on + strandat 60.268 kb on - strandat 60.275 kb on - strandat 60.275 kb on - strandat 60.295 kb on - strandat 60.353 kb on - strandat 60.397 kb on - strandat 60.436 kb on + strandat 60.444 kb on - strandat 60.444 kb on - strandat 60.444 kb on - strandat 60.521 kb on + strandat 60.529 kb on - strandat 60.599 kb on + strandat 60.634 kb on + strand, within DVU0054at 60.634 kb on + strand, within DVU0054at 60.642 kb on - strand, within DVU0054at 60.660 kb on + strand, within DVU0054at 60.768 kb on + strand, within DVU0054at 60.851 kb on + strand, within DVU0054at 60.881 kb on - strand, within DVU0054at 60.893 kb on + strand, within DVU0054at 60.896 kb on - strand, within DVU0054at 60.956 kb on + strand, within DVU0054at 60.956 kb on - strand, within DVU0054at 60.957 kb on + strand, within DVU0054at 60.964 kb on - strand, within DVU0054at 60.964 kb on - strand, within DVU0054at 60.964 kb on - strand, within DVU0054at 60.968 kb on + strand, within DVU0054at 61.003 kb on + strand, within DVU0054at 61.037 kb on - strand, within DVU0054at 61.058 kb on - strand, within DVU0054at 61.067 kb on + strand, within DVU0054at 61.067 kb on + strand, within DVU0054at 61.072 kb on + strand, within DVU0054at 61.075 kb on - strand, within DVU0054at 61.098 kb on + strand, within DVU0054at 61.126 kb on - strand, within DVU0054at 61.152 kb on - strand, within DVU0054at 61.167 kb on + strand, within DVU0054at 61.198 kb on + strand, within DVU0054at 61.198 kb on + strand, within DVU0054at 61.206 kb on - strand, within DVU0054at 61.324 kb on + strand, within DVU0054at 61.324 kb on + strand, within DVU0054at 61.348 kb on + strand, within DVU0054at 61.348 kb on + strand, within DVU0054at 61.356 kb on - strand, within DVU0054at 61.356 kb on - strand, within DVU0054at 61.496 kb on + strand, within DVU0054at 61.513 kb on - strand, within DVU0054at 61.525 kb on - strand, within DVU0054at 61.542 kb on - strand, within DVU0054at 61.571 kb on - strand, within DVU0054at 61.608 kb on - strand, within DVU0054at 61.709 kb on + strandat 61.729 kb on - strandat 62.704 kb on - strandat 62.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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59,526 + DVU0053 0.69 +1.3
59,544 - DVU0053 0.70 -2.2
59,544 - DVU0053 0.70 -0.4
59,614 + DVU0053 0.74 -0.8
59,635 + DVU0053 0.75 +1.0
59,643 - DVU0053 0.75 -2.2
59,767 + DVU0053 0.82 -1.2
59,775 - DVU0053 0.83 -0.4
59,775 - DVU0053 0.83 +0.7
59,775 - DVU0053 0.83 -0.3
59,789 - DVU0053 0.84 +0.0
59,827 + DVU0053 0.86 -0.1
59,829 - DVU0053 0.86 -0.0
59,848 + DVU0053 0.87 -0.5
59,856 - DVU0053 0.87 -0.5
59,856 - DVU0053 0.87 -0.0
59,927 + +0.0
59,927 + -0.4
59,927 + +0.4
59,935 - -0.6
59,935 - -0.6
59,935 - -0.3
59,935 - -0.4
59,940 - -0.2
59,987 + -0.4
60,043 - -0.5
60,049 - +0.1
60,066 - -0.2
60,071 + -0.4
60,071 + -0.4
60,079 - -0.1
60,142 + +0.1
60,267 + +2.0
60,267 + -0.3
60,268 - +0.4
60,275 - -0.9
60,275 - -0.3
60,295 - -1.0
60,353 - +0.8
60,397 - +1.3
60,436 + -0.2
60,444 - -1.3
60,444 - -0.9
60,444 - -0.5
60,521 + -0.9
60,529 - -0.3
60,599 + -1.4
60,634 + DVU0054 0.10 +0.1
60,634 + DVU0054 0.10 -0.5
60,642 - DVU0054 0.11 +0.7
60,660 + DVU0054 0.12 -0.2
60,768 + DVU0054 0.21 +0.0
60,851 + DVU0054 0.27 -0.2
60,881 - DVU0054 0.30 +0.7
60,893 + DVU0054 0.31 +0.1
60,896 - DVU0054 0.31 -0.7
60,956 + DVU0054 0.36 +0.2
60,956 - DVU0054 0.36 +0.6
60,957 + DVU0054 0.36 +0.9
60,964 - DVU0054 0.36 -0.7
60,964 - DVU0054 0.36 +0.7
60,964 - DVU0054 0.36 -0.2
60,968 + DVU0054 0.37 -1.6
61,003 + DVU0054 0.39 -0.2
61,037 - DVU0054 0.42 -0.3
61,058 - DVU0054 0.44 +0.1
61,067 + DVU0054 0.44 -0.4
61,067 + DVU0054 0.44 +0.4
61,072 + DVU0054 0.45 -0.3
61,075 - DVU0054 0.45 +1.3
61,098 + DVU0054 0.47 -0.7
61,126 - DVU0054 0.49 +1.0
61,152 - DVU0054 0.51 -0.3
61,167 + DVU0054 0.52 +1.0
61,198 + DVU0054 0.55 -0.4
61,198 + DVU0054 0.55 -0.7
61,206 - DVU0054 0.55 -0.0
61,324 + DVU0054 0.65 +0.6
61,324 + DVU0054 0.65 +1.4
61,348 + DVU0054 0.67 -1.4
61,348 + DVU0054 0.67 +0.4
61,356 - DVU0054 0.67 +1.0
61,356 - DVU0054 0.67 -0.7
61,496 + DVU0054 0.78 -1.4
61,513 - DVU0054 0.80 -0.3
61,525 - DVU0054 0.81 -1.2
61,542 - DVU0054 0.82 +1.2
61,571 - DVU0054 0.84 +0.7
61,608 - DVU0054 0.87 +0.5
61,709 + -1.1
61,729 - -0.6
62,704 - -0.1
62,758 + +1.8

Or see this region's nucleotide sequence