Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3189 and DVU3190 are separated by 131 nucleotides DVU3190 and rluC are separated by 77 nucleotides
DVU3189: DVU3189 - NOL1/NOP2/sun family protein (TIGR), at 3,348,264 to 3,349,559
DVU3189
DVU3190: DVU3190 - hypothetical protein (TIGR), at 3,349,691 to 3,351,358
DVU3190
DVU3191: rluC - ribosomal large subunit pseudouridine synthase C (TIGR), at 3,351,436 to 3,352,608
rluC
Position (kb)
3349
3350
3351
3352 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.696 kb on - strand, within DVU3189 at 3348.802 kb on + strand, within DVU3189 at 3348.907 kb on - strand, within DVU3189 at 3349.021 kb on - strand, within DVU3189 at 3349.021 kb on - strand, within DVU3189 at 3349.054 kb on - strand, within DVU3189 at 3349.073 kb on + strand, within DVU3189 at 3349.240 kb on - strand, within DVU3189 at 3349.309 kb on + strand, within DVU3189 at 3349.329 kb on - strand, within DVU3189 at 3349.359 kb on + strand, within DVU3189 at 3349.359 kb on + strand, within DVU3189 at 3349.366 kb on + strand, within DVU3189 at 3349.516 kb on + strand at 3349.573 kb on + strand at 3351.561 kb on + strand, within rluC at 3351.782 kb on + strand, within rluC at 3351.911 kb on + strand, within rluC at 3351.917 kb on + strand, within rluC at 3351.960 kb on - strand, within rluC at 3352.140 kb on + strand, within rluC at 3352.140 kb on + strand, within rluC at 3352.281 kb on + strand, within rluC
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 3,348,696 - DVU3189 0.33 +0.3 3,348,696 - DVU3189 0.33 -0.6 3,348,696 - DVU3189 0.33 -1.6 3,348,696 - DVU3189 0.33 +0.2 3,348,696 - DVU3189 0.33 +0.1 3,348,696 - DVU3189 0.33 -0.8 3,348,696 - DVU3189 0.33 -1.3 3,348,696 - DVU3189 0.33 -0.7 3,348,802 + DVU3189 0.42 -1.1 3,348,907 - DVU3189 0.50 -0.9 3,349,021 - DVU3189 0.58 -0.2 3,349,021 - DVU3189 0.58 -2.5 3,349,054 - DVU3189 0.61 -0.2 3,349,073 + DVU3189 0.62 +2.1 3,349,240 - DVU3189 0.75 +0.3 3,349,309 + DVU3189 0.81 -1.7 3,349,329 - DVU3189 0.82 -0.6 3,349,359 + DVU3189 0.84 -1.0 3,349,359 + DVU3189 0.84 -0.3 3,349,366 + DVU3189 0.85 +0.0 3,349,516 + -0.0 3,349,573 + -1.1 3,351,561 + rluC DVU3191 0.11 -0.7 3,351,782 + rluC DVU3191 0.29 -0.7 3,351,911 + rluC DVU3191 0.40 -0.7 3,351,917 + rluC DVU3191 0.41 -0.6 3,351,960 - rluC DVU3191 0.45 -0.4 3,352,140 + rluC DVU3191 0.60 -0.6 3,352,140 + rluC DVU3191 0.60 -0.6 3,352,281 + rluC DVU3191 0.72 -0.5
Or see this region's nucleotide sequence