Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3030

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpta and ackA are separated by 25 nucleotidesackA and DVU3031 are separated by 99 nucleotides DVU3029: pta - phosphate acetyltransferase (TIGR), at 3,152,216 to 3,154,330 pta DVU3030: ackA - acetate kinase (TIGR), at 3,154,356 to 3,155,564 ackA DVU3031: DVU3031 - conserved hypothetical protein (TIGR), at 3,155,664 to 3,156,755 DVU3031 Position (kb) 3154 3155 3156Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3154.332 kb on - strandat 3155.582 kb on - strandat 3155.614 kb on + strandat 3155.684 kb on - strandat 3155.709 kb on + strandat 3155.834 kb on + strand, within DVU3031at 3155.952 kb on + strand, within DVU3031at 3155.956 kb on + strand, within DVU3031at 3155.960 kb on - strand, within DVU3031at 3156.019 kb on - strand, within DVU3031at 3156.019 kb on - strand, within DVU3031at 3156.034 kb on + strand, within DVU3031at 3156.061 kb on + strand, within DVU3031at 3156.061 kb on + strand, within DVU3031at 3156.061 kb on + strand, within DVU3031at 3156.145 kb on - strand, within DVU3031at 3156.145 kb on - strand, within DVU3031at 3156.276 kb on - strand, within DVU3031at 3156.528 kb on - strand, within DVU3031at 3156.542 kb on + strand, within DVU3031

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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3,154,332 - -1.2
3,155,582 - -0.9
3,155,614 + -0.4
3,155,684 - -1.4
3,155,709 + +0.3
3,155,834 + DVU3031 0.16 -0.2
3,155,952 + DVU3031 0.26 -1.5
3,155,956 + DVU3031 0.27 +1.8
3,155,960 - DVU3031 0.27 -1.4
3,156,019 - DVU3031 0.33 -0.7
3,156,019 - DVU3031 0.33 -1.5
3,156,034 + DVU3031 0.34 +1.1
3,156,061 + DVU3031 0.36 -0.9
3,156,061 + DVU3031 0.36 -0.2
3,156,061 + DVU3031 0.36 +1.6
3,156,145 - DVU3031 0.44 +0.8
3,156,145 - DVU3031 0.44 -1.3
3,156,276 - DVU3031 0.56 +0.6
3,156,528 - DVU3031 0.79 -3.8
3,156,542 + DVU3031 0.80 +0.6

Or see this region's nucleotide sequence