Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2684

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2683 and DVU2684 are separated by 148 nucleotidesDVU2684 and DVU2686 are separated by 567 nucleotides DVU2683: DVU2683 - L-lactate permease family protein (TIGR), at 2,796,644 to 2,798,194 DVU2683 DVU2684: DVU2684 - hypothetical protein (TIGR), at 2,798,343 to 2,799,023 DVU2684 DVU2686: DVU2686 - peptidase, S24 family (TIGR), at 2,799,591 to 2,800,373 DVU2686 Position (kb) 2798 2799 2800Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2797.442 kb on + strand, within DVU2683at 2797.714 kb on - strand, within DVU2683at 2797.719 kb on - strand, within DVU2683at 2797.836 kb on - strand, within DVU2683at 2797.910 kb on - strand, within DVU2683at 2797.960 kb on + strand, within DVU2683at 2797.972 kb on + strand, within DVU2683at 2797.979 kb on + strand, within DVU2683at 2798.101 kb on - strandat 2798.157 kb on - strandat 2798.163 kb on + strandat 2798.257 kb on - strandat 2798.354 kb on - strandat 2798.359 kb on - strandat 2798.677 kb on + strand, within DVU2684at 2798.688 kb on - strand, within DVU2684at 2798.820 kb on + strand, within DVU2684at 2798.850 kb on - strand, within DVU2684at 2798.868 kb on + strand, within DVU2684at 2798.868 kb on + strand, within DVU2684at 2798.944 kb on + strand, within DVU2684at 2799.015 kb on - strandat 2799.020 kb on - strandat 2799.031 kb on + strandat 2799.039 kb on - strandat 2799.057 kb on - strandat 2799.129 kb on - strandat 2799.155 kb on + strandat 2799.174 kb on + strandat 2799.177 kb on - strandat 2799.182 kb on - strandat 2799.182 kb on - strandat 2799.205 kb on - strandat 2799.453 kb on + strandat 2799.456 kb on - strandat 2799.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,797,442 + DVU2683 0.51 -0.4
2,797,714 - DVU2683 0.69 -1.2
2,797,719 - DVU2683 0.69 -1.2
2,797,836 - DVU2683 0.77 -0.2
2,797,910 - DVU2683 0.82 +0.0
2,797,960 + DVU2683 0.85 +0.4
2,797,972 + DVU2683 0.86 -1.9
2,797,979 + DVU2683 0.86 -0.8
2,798,101 - +0.8
2,798,157 - +2.4
2,798,163 + -0.8
2,798,257 - -2.1
2,798,354 - -0.0
2,798,359 - +0.0
2,798,677 + DVU2684 0.49 -0.2
2,798,688 - DVU2684 0.51 -1.6
2,798,820 + DVU2684 0.70 +0.8
2,798,850 - DVU2684 0.74 +0.3
2,798,868 + DVU2684 0.77 +0.1
2,798,868 + DVU2684 0.77 +0.0
2,798,944 + DVU2684 0.88 -0.0
2,799,015 - -0.1
2,799,020 - -0.7
2,799,031 + +3.5
2,799,039 - +1.6
2,799,057 - -0.4
2,799,129 - -0.8
2,799,155 + +1.2
2,799,174 + -0.6
2,799,177 - -0.5
2,799,182 - -2.1
2,799,182 - +1.2
2,799,205 - -0.6
2,799,453 + -0.8
2,799,456 - +0.6
2,799,461 - +0.3

Or see this region's nucleotide sequence