Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2322

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2320 and DVU2322 are separated by 458 nucleotidesDVU2322 and DVU2323 are separated by 249 nucleotidesDVU2323 and DVU2324 are separated by 212 nucleotides DVU2320: DVU2320 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein (TIGR), at 2,415,017 to 2,416,855 DVU2320 DVU2322: DVU2322 - UTP--glucose-1-phosphate uridylyltransferase, putative (TIGR), at 2,417,314 to 2,418,753 DVU2322 DVU2323: DVU2323 - hypothetical protein (TIGR), at 2,419,003 to 2,419,425 DVU2323 DVU2324: DVU2324 - copper-translocating P-type ATPase (TIGR), at 2,419,638 to 2,422,355 DVU2324 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -2 -1 0 1 2at 2416.884 kb on + strandat 2416.937 kb on - strandat 2416.937 kb on - strandat 2416.937 kb on - strandat 2416.992 kb on + strandat 2417.000 kb on - strandat 2417.000 kb on - strandat 2417.010 kb on + strandat 2417.032 kb on - strandat 2417.082 kb on + strandat 2417.082 kb on + strandat 2417.090 kb on - strandat 2417.090 kb on - strandat 2417.090 kb on - strandat 2417.097 kb on - strandat 2417.149 kb on - strandat 2417.170 kb on - strandat 2417.170 kb on - strandat 2417.237 kb on + strandat 2417.245 kb on - strandat 2417.250 kb on + strandat 2417.256 kb on + strandat 2417.517 kb on - strand, within DVU2322at 2417.586 kb on + strand, within DVU2322at 2417.613 kb on + strand, within DVU2322at 2417.764 kb on - strand, within DVU2322at 2417.837 kb on - strand, within DVU2322at 2418.086 kb on - strand, within DVU2322at 2418.093 kb on + strand, within DVU2322at 2418.101 kb on - strand, within DVU2322at 2418.106 kb on + strand, within DVU2322at 2418.108 kb on - strand, within DVU2322at 2418.131 kb on + strand, within DVU2322at 2418.171 kb on - strand, within DVU2322at 2418.207 kb on + strand, within DVU2322at 2418.271 kb on - strand, within DVU2322at 2418.461 kb on - strand, within DVU2322at 2418.508 kb on + strand, within DVU2322at 2418.508 kb on + strand, within DVU2322at 2418.516 kb on - strand, within DVU2322at 2418.536 kb on + strand, within DVU2322at 2418.569 kb on + strand, within DVU2322at 2418.700 kb on - strandat 2418.707 kb on - strandat 2418.923 kb on + strandat 2419.061 kb on - strand, within DVU2323at 2419.103 kb on - strand, within DVU2323at 2419.105 kb on + strand, within DVU2323at 2419.250 kb on + strand, within DVU2323at 2419.264 kb on - strand, within DVU2323at 2419.343 kb on - strand, within DVU2323at 2419.512 kb on - strandat 2419.574 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
remove
2,416,884 + +0.2
2,416,937 - +1.4
2,416,937 - -1.4
2,416,937 - +1.6
2,416,992 + -0.7
2,417,000 - +0.4
2,417,000 - -0.2
2,417,010 + +0.2
2,417,032 - +1.8
2,417,082 + +0.6
2,417,082 + -0.8
2,417,090 - +0.3
2,417,090 - +0.3
2,417,090 - -0.4
2,417,097 - -0.9
2,417,149 - +0.1
2,417,170 - -1.0
2,417,170 - -0.4
2,417,237 + +0.2
2,417,245 - -0.1
2,417,250 + -1.3
2,417,256 + -0.1
2,417,517 - DVU2322 0.14 -0.8
2,417,586 + DVU2322 0.19 +0.8
2,417,613 + DVU2322 0.21 -0.2
2,417,764 - DVU2322 0.31 +0.8
2,417,837 - DVU2322 0.36 +0.4
2,418,086 - DVU2322 0.54 -0.7
2,418,093 + DVU2322 0.54 -0.7
2,418,101 - DVU2322 0.55 +0.4
2,418,106 + DVU2322 0.55 -0.8
2,418,108 - DVU2322 0.55 +0.1
2,418,131 + DVU2322 0.57 -0.1
2,418,171 - DVU2322 0.60 +0.3
2,418,207 + DVU2322 0.62 +0.9
2,418,271 - DVU2322 0.66 -0.3
2,418,461 - DVU2322 0.80 -1.8
2,418,508 + DVU2322 0.83 -0.7
2,418,508 + DVU2322 0.83 +0.9
2,418,516 - DVU2322 0.83 -1.0
2,418,536 + DVU2322 0.85 -0.6
2,418,569 + DVU2322 0.87 +0.3
2,418,700 - -0.6
2,418,707 - +0.6
2,418,923 + +1.4
2,419,061 - DVU2323 0.14 -0.1
2,419,103 - DVU2323 0.24 -1.2
2,419,105 + DVU2323 0.24 -0.4
2,419,250 + DVU2323 0.58 -1.8
2,419,264 - DVU2323 0.62 -1.0
2,419,343 - DVU2323 0.80 -0.9
2,419,512 - -2.1
2,419,574 + -0.9

Or see this region's nucleotide sequence