Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2251

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2250 and DVU2251 are separated by 332 nucleotidesDVU2251 and dnaA-2 are separated by 216 nucleotides DVU2250: DVU2250 - AMP-binding protein (TIGR), at 2,344,952 to 2,346,607 DVU2250 DVU2251: DVU2251 - DNA-binding protein (TIGR), at 2,346,940 to 2,347,500 DVU2251 DVU2252: dnaA-2 - chromosomal replication initiator protein DnaA (TIGR), at 2,347,717 to 2,349,192 dnaA-2 Position (kb) 2346 2347 2348Strain fitness (log2 ratio) -1 0 1 2 3at 2345.955 kb on + strand, within DVU2250at 2345.963 kb on - strand, within DVU2250at 2346.389 kb on - strand, within DVU2250at 2346.389 kb on - strand, within DVU2250at 2346.462 kb on - strandat 2346.631 kb on + strandat 2346.702 kb on - strandat 2346.744 kb on + strandat 2346.832 kb on + strandat 2346.963 kb on - strandat 2347.022 kb on + strand, within DVU2251at 2347.065 kb on + strand, within DVU2251at 2347.065 kb on + strand, within DVU2251at 2347.073 kb on - strand, within DVU2251at 2347.073 kb on - strand, within DVU2251at 2347.489 kb on - strandat 2347.512 kb on - strandat 2347.667 kb on - strandat 2347.715 kb on - strandat 2347.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,345,955 + DVU2250 0.61 +0.4
2,345,963 - DVU2250 0.61 +3.2
2,346,389 - DVU2250 0.87 +1.0
2,346,389 - DVU2250 0.87 +1.1
2,346,462 - -0.0
2,346,631 + +0.5
2,346,702 - +0.3
2,346,744 + +0.8
2,346,832 + +0.5
2,346,963 - +0.4
2,347,022 + DVU2251 0.15 +0.6
2,347,065 + DVU2251 0.22 -0.1
2,347,065 + DVU2251 0.22 +0.7
2,347,073 - DVU2251 0.24 +0.5
2,347,073 - DVU2251 0.24 +2.1
2,347,489 - +0.0
2,347,512 - -0.5
2,347,667 - -0.9
2,347,715 - -0.1
2,347,774 + +0.0

Or see this region's nucleotide sequence