Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0952

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmoeA-2 and DVU0952 are separated by 1 nucleotidesDVU0952 and tyrS are separated by 193 nucleotides DVU0951: moeA-2 - molybdopterin biosynthesis MoeA protein, putative (TIGR), at 1,043,876 to 1,045,294 moeA-2 DVU0952: DVU0952 - conserved hypothetical protein TIGR00282 (TIGR), at 1,045,296 to 1,046,168 DVU0952 DVU0953: tyrS - tyrosyl-tRNA synthetase (TIGR), at 1,046,362 to 1,047,558 tyrS Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1 2at 1044.335 kb on - strand, within moeA-2at 1044.477 kb on - strand, within moeA-2at 1044.488 kb on + strand, within moeA-2at 1044.683 kb on - strand, within moeA-2at 1044.737 kb on + strand, within moeA-2at 1044.802 kb on - strand, within moeA-2at 1044.943 kb on + strand, within moeA-2at 1044.944 kb on + strand, within moeA-2at 1044.972 kb on - strand, within moeA-2at 1045.056 kb on + strand, within moeA-2at 1045.076 kb on - strand, within moeA-2at 1045.142 kb on + strand, within moeA-2at 1045.189 kb on + strandat 1045.287 kb on - strandat 1045.288 kb on + strandat 1045.296 kb on - strandat 1045.339 kb on + strandat 1045.347 kb on - strandat 1045.347 kb on - strandat 1045.349 kb on + strandat 1045.479 kb on + strand, within DVU0952at 1045.479 kb on + strand, within DVU0952at 1045.600 kb on - strand, within DVU0952at 1045.629 kb on - strand, within DVU0952at 1045.718 kb on + strand, within DVU0952at 1045.726 kb on - strand, within DVU0952at 1045.752 kb on + strand, within DVU0952at 1045.781 kb on - strand, within DVU0952at 1045.781 kb on - strand, within DVU0952at 1045.807 kb on - strand, within DVU0952at 1045.856 kb on - strand, within DVU0952at 1045.925 kb on + strand, within DVU0952at 1045.925 kb on + strand, within DVU0952at 1045.935 kb on + strand, within DVU0952at 1045.970 kb on + strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1046.072 kb on + strand, within DVU0952at 1046.072 kb on + strand, within DVU0952at 1046.074 kb on + strand, within DVU0952at 1046.074 kb on + strand, within DVU0952at 1046.149 kb on + strandat 1046.169 kb on - strandat 1046.169 kb on - strandat 1046.188 kb on + strandat 1046.217 kb on + strandat 1046.220 kb on - strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.273 kb on - strandat 1046.321 kb on + strandat 1046.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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1,044,335 - moeA-2 DVU0951 0.32 +2.4
1,044,477 - moeA-2 DVU0951 0.42 -0.3
1,044,488 + moeA-2 DVU0951 0.43 -1.0
1,044,683 - moeA-2 DVU0951 0.57 -0.6
1,044,737 + moeA-2 DVU0951 0.61 +0.6
1,044,802 - moeA-2 DVU0951 0.65 +1.5
1,044,943 + moeA-2 DVU0951 0.75 +1.3
1,044,944 + moeA-2 DVU0951 0.75 +0.4
1,044,972 - moeA-2 DVU0951 0.77 +1.2
1,045,056 + moeA-2 DVU0951 0.83 +0.7
1,045,076 - moeA-2 DVU0951 0.85 +2.6
1,045,142 + moeA-2 DVU0951 0.89 +0.1
1,045,189 + +1.2
1,045,287 - -1.8
1,045,288 + +2.5
1,045,296 - -0.1
1,045,339 + -0.1
1,045,347 - +1.6
1,045,347 - +0.4
1,045,349 + -1.4
1,045,479 + DVU0952 0.21 +0.2
1,045,479 + DVU0952 0.21 +0.0
1,045,600 - DVU0952 0.35 +0.2
1,045,629 - DVU0952 0.38 -0.2
1,045,718 + DVU0952 0.48 +0.6
1,045,726 - DVU0952 0.49 -0.3
1,045,752 + DVU0952 0.52 -0.6
1,045,781 - DVU0952 0.56 +0.7
1,045,781 - DVU0952 0.56 -0.5
1,045,807 - DVU0952 0.59 -0.9
1,045,856 - DVU0952 0.64 -0.1
1,045,925 + DVU0952 0.72 +1.8
1,045,925 + DVU0952 0.72 +0.4
1,045,935 + DVU0952 0.73 +1.5
1,045,970 + DVU0952 0.77 -0.4
1,045,978 - DVU0952 0.78 -0.4
1,045,978 - DVU0952 0.78 -0.3
1,045,978 - DVU0952 0.78 -0.3
1,045,978 - DVU0952 0.78 +1.5
1,046,072 + DVU0952 0.89 -0.2
1,046,072 + DVU0952 0.89 -0.2
1,046,074 + DVU0952 0.89 +0.3
1,046,074 + DVU0952 0.89 -1.4
1,046,149 + -0.4
1,046,169 - -0.4
1,046,169 - +1.0
1,046,188 + +2.0
1,046,217 + -0.3
1,046,220 - -2.0
1,046,222 + -0.5
1,046,222 + -0.4
1,046,222 + +0.6
1,046,222 + +0.5
1,046,230 - +0.5
1,046,230 - +0.7
1,046,230 - -0.1
1,046,230 - -0.4
1,046,273 - -0.6
1,046,321 + -1.8
1,046,329 - -2.0

Or see this region's nucleotide sequence