Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0857

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemB and nirJ-1 are separated by 9 nucleotidesnirJ-1 and DVU0858 are separated by 315 nucleotides DVU0856: hemB - porphobilinogen synthase (TIGR), at 945,759 to 946,751 hemB DVU0857: nirJ-1 - radical SAM domain protein (TIGR), at 946,761 to 947,942 nirJ-1 DVU0858: DVU0858 - lipoprotein, putative (TIGR), at 948,258 to 948,941 DVU0858 Position (kb) 946 947 948Strain fitness (log2 ratio) -2 -1 0 1at 945.778 kb on - strandat 948.113 kb on - strandat 948.189 kb on + strandat 948.201 kb on + strandat 948.223 kb on + strandat 948.312 kb on + strandat 948.322 kb on + strandat 948.345 kb on + strand, within DVU0858at 948.394 kb on - strand, within DVU0858at 948.403 kb on + strand, within DVU0858at 948.571 kb on + strand, within DVU0858at 948.579 kb on - strand, within DVU0858at 948.603 kb on - strand, within DVU0858at 948.664 kb on - strand, within DVU0858at 948.664 kb on - strand, within DVU0858at 948.794 kb on - strand, within DVU0858at 948.795 kb on - strand, within DVU0858at 948.854 kb on - strand, within DVU0858at 948.894 kb on + strandat 948.894 kb on + strandat 948.902 kb on - strandat 948.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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945,778 - -2.1
948,113 - -1.0
948,189 + -1.0
948,201 + +0.2
948,223 + -0.1
948,312 + +0.1
948,322 + -0.2
948,345 + DVU0858 0.13 +0.2
948,394 - DVU0858 0.20 -0.2
948,403 + DVU0858 0.21 +0.1
948,571 + DVU0858 0.46 -0.1
948,579 - DVU0858 0.47 +0.1
948,603 - DVU0858 0.50 -0.3
948,664 - DVU0858 0.59 +0.3
948,664 - DVU0858 0.59 +0.2
948,794 - DVU0858 0.78 +0.1
948,795 - DVU0858 0.79 -1.4
948,854 - DVU0858 0.87 +0.2
948,894 + -0.9
948,894 + -1.1
948,902 - +0.3
948,925 + +0.1

Or see this region's nucleotide sequence