Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfbB and DVU0686 are separated by 83 nucleotides DVU0686 and aor-2 overlap by 32 nucleotides aor-2 and DVU0688 are separated by 0 nucleotides DVU0688 and rnhA are separated by 9 nucleotides
DVU0685: rfbB - phosphomannomutase (TIGR), at 759,320 to 760,681
rfbB
DVU0686: DVU0686 - iron-sulfur cluster-binding protein (TIGR), at 760,765 to 761,253
DVU0686
DVU0687: aor-2 - aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative (TIGR), at 761,222 to 763,006
aor-2
DVU0688: DVU0688 - hypothetical protein (TIGR), at 763,007 to 763,507
DVU0688
DVU0689: rnhA - ribonuclease HI (TIGR), at 763,517 to 763,987
rnhA
Position (kb) 761
762
763
764 Strain fitness (log2 ratio) -1
0
1
2
3 at 760.709 kb on + strand at 760.731 kb on - strand at 760.823 kb on + strand, within DVU0686 at 760.824 kb on - strand, within DVU0686 at 760.824 kb on - strand, within DVU0686 at 760.830 kb on + strand, within DVU0686 at 760.830 kb on + strand, within DVU0686 at 760.833 kb on - strand, within DVU0686 at 760.883 kb on + strand, within DVU0686 at 760.891 kb on - strand, within DVU0686 at 760.904 kb on - strand, within DVU0686 at 760.913 kb on + strand, within DVU0686 at 760.935 kb on - strand, within DVU0686 at 760.954 kb on + strand, within DVU0686 at 761.070 kb on - strand, within DVU0686 at 761.070 kb on - strand, within DVU0686 at 761.147 kb on - strand, within DVU0686 at 761.189 kb on + strand, within DVU0686 at 761.202 kb on - strand, within DVU0686 at 761.225 kb on - strand at 761.228 kb on + strand at 761.236 kb on - strand at 761.290 kb on + strand at 761.360 kb on + strand at 761.360 kb on + strand at 761.363 kb on + strand at 761.373 kb on - strand at 761.373 kb on - strand at 761.427 kb on - strand, within aor-2 at 761.496 kb on + strand, within aor-2 at 761.504 kb on - strand, within aor-2 at 761.529 kb on + strand, within aor-2 at 761.569 kb on + strand, within aor-2 at 761.575 kb on + strand, within aor-2 at 761.726 kb on - strand, within aor-2 at 761.776 kb on + strand, within aor-2 at 761.885 kb on + strand, within aor-2 at 761.915 kb on + strand, within aor-2 at 761.937 kb on - strand, within aor-2 at 761.972 kb on + strand, within aor-2 at 762.070 kb on - strand, within aor-2 at 762.222 kb on + strand, within aor-2 at 762.222 kb on + strand, within aor-2 at 762.246 kb on - strand, within aor-2 at 762.295 kb on + strand, within aor-2 at 762.295 kb on - strand, within aor-2 at 762.314 kb on + strand, within aor-2 at 762.327 kb on - strand, within aor-2 at 762.424 kb on - strand, within aor-2 at 762.460 kb on + strand, within aor-2 at 762.468 kb on - strand, within aor-2 at 762.487 kb on + strand, within aor-2 at 762.495 kb on - strand, within aor-2 at 762.511 kb on - strand, within aor-2 at 762.588 kb on - strand, within aor-2 at 762.593 kb on + strand, within aor-2 at 762.634 kb on + strand, within aor-2 at 762.634 kb on + strand, within aor-2 at 762.637 kb on - strand, within aor-2 at 762.642 kb on - strand, within aor-2 at 762.646 kb on + strand, within aor-2 at 762.646 kb on + strand, within aor-2 at 762.646 kb on + strand, within aor-2 at 762.646 kb on + strand, within aor-2 at 762.646 kb on + strand, within aor-2 at 762.654 kb on - strand, within aor-2 at 762.758 kb on + strand, within aor-2 at 762.789 kb on + strand, within aor-2 at 762.952 kb on + strand at 762.960 kb on - strand at 762.990 kb on - strand at 763.001 kb on + strand at 763.017 kb on + strand at 763.025 kb on - strand at 763.025 kb on - strand at 763.036 kb on - strand at 763.038 kb on - strand at 763.075 kb on + strand, within DVU0688 at 763.080 kb on + strand, within DVU0688 at 763.080 kb on + strand, within DVU0688 at 763.083 kb on - strand, within DVU0688 at 763.088 kb on - strand, within DVU0688 at 763.088 kb on - strand, within DVU0688 at 763.104 kb on - strand, within DVU0688 at 763.126 kb on + strand, within DVU0688 at 763.140 kb on - strand, within DVU0688 at 763.319 kb on - strand, within DVU0688 at 763.374 kb on - strand, within DVU0688 at 763.417 kb on - strand, within DVU0688 at 763.530 kb on + strand at 763.727 kb on + strand, within rnhA at 763.786 kb on - strand, within rnhA
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 760,709 + +1.1 760,731 - -0.9 760,823 + DVU0686 0.12 +0.1 760,824 - DVU0686 0.12 -0.3 760,824 - DVU0686 0.12 +0.0 760,830 + DVU0686 0.13 -0.7 760,830 + DVU0686 0.13 +1.7 760,833 - DVU0686 0.14 +0.3 760,883 + DVU0686 0.24 -0.7 760,891 - DVU0686 0.26 +2.0 760,904 - DVU0686 0.28 -0.6 760,913 + DVU0686 0.30 -0.8 760,935 - DVU0686 0.35 -1.7 760,954 + DVU0686 0.39 +0.2 761,070 - DVU0686 0.62 -0.1 761,070 - DVU0686 0.62 -0.3 761,147 - DVU0686 0.78 +0.2 761,189 + DVU0686 0.87 +1.2 761,202 - DVU0686 0.89 -0.3 761,225 - -0.1 761,228 + -0.2 761,236 - -0.2 761,290 + -1.3 761,360 + +1.7 761,360 + +1.6 761,363 + +3.2 761,373 - -0.6 761,373 - +0.9 761,427 - aor-2 DVU0687 0.11 -0.4 761,496 + aor-2 DVU0687 0.15 -0.4 761,504 - aor-2 DVU0687 0.16 +0.3 761,529 + aor-2 DVU0687 0.17 -0.0 761,569 + aor-2 DVU0687 0.19 -0.5 761,575 + aor-2 DVU0687 0.20 +0.3 761,726 - aor-2 DVU0687 0.28 +0.8 761,776 + aor-2 DVU0687 0.31 +2.1 761,885 + aor-2 DVU0687 0.37 -0.1 761,915 + aor-2 DVU0687 0.39 -0.5 761,937 - aor-2 DVU0687 0.40 +0.3 761,972 + aor-2 DVU0687 0.42 -0.7 762,070 - aor-2 DVU0687 0.48 +0.2 762,222 + aor-2 DVU0687 0.56 +0.7 762,222 + aor-2 DVU0687 0.56 -1.2 762,246 - aor-2 DVU0687 0.57 +2.7 762,295 + aor-2 DVU0687 0.60 +0.4 762,295 - aor-2 DVU0687 0.60 -0.6 762,314 + aor-2 DVU0687 0.61 -0.1 762,327 - aor-2 DVU0687 0.62 -0.4 762,424 - aor-2 DVU0687 0.67 -0.2 762,460 + aor-2 DVU0687 0.69 +0.2 762,468 - aor-2 DVU0687 0.70 -0.2 762,487 + aor-2 DVU0687 0.71 +0.2 762,495 - aor-2 DVU0687 0.71 -0.4 762,511 - aor-2 DVU0687 0.72 +0.0 762,588 - aor-2 DVU0687 0.77 +2.7 762,593 + aor-2 DVU0687 0.77 +1.5 762,634 + aor-2 DVU0687 0.79 -0.2 762,634 + aor-2 DVU0687 0.79 +2.2 762,637 - aor-2 DVU0687 0.79 +0.2 762,642 - aor-2 DVU0687 0.80 +0.0 762,646 + aor-2 DVU0687 0.80 -1.1 762,646 + aor-2 DVU0687 0.80 -0.9 762,646 + aor-2 DVU0687 0.80 -0.5 762,646 + aor-2 DVU0687 0.80 -0.1 762,646 + aor-2 DVU0687 0.80 -0.0 762,654 - aor-2 DVU0687 0.80 +2.0 762,758 + aor-2 DVU0687 0.86 -1.2 762,789 + aor-2 DVU0687 0.88 -0.0 762,952 + -0.7 762,960 - +0.1 762,990 - +0.8 763,001 + +0.5 763,017 + -0.9 763,025 - -1.0 763,025 - -0.3 763,036 - -0.6 763,038 - -0.2 763,075 + DVU0688 0.14 +0.6 763,080 + DVU0688 0.15 +0.4 763,080 + DVU0688 0.15 -0.4 763,083 - DVU0688 0.15 -0.5 763,088 - DVU0688 0.16 +1.1 763,088 - DVU0688 0.16 -0.6 763,104 - DVU0688 0.19 -0.6 763,126 + DVU0688 0.24 -0.8 763,140 - DVU0688 0.27 -0.0 763,319 - DVU0688 0.62 -0.3 763,374 - DVU0688 0.73 -0.0 763,417 - DVU0688 0.82 -0.6 763,530 + -0.5 763,727 + rnhA DVU0689 0.45 +0.8 763,786 - rnhA DVU0689 0.57 +2.4
Or see this region's nucleotide sequence