Experiment: MoYLS4 media with NH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2858 and DvMF_2859 are separated by 178 nucleotides DvMF_2859 and DvMF_2860 are separated by 265 nucleotides DvMF_2860 and DvMF_2861 are separated by 227 nucleotides
DvMF_2858: DvMF_2858 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,609,961 to 3,610,698
_2858
DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665
_2859
DvMF_2860: DvMF_2860 - response regulator receiver protein (RefSeq), at 3,611,931 to 3,612,329
_2860
DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483
_2861
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1
2 at 3609.925 kb on + strand at 3610.007 kb on + strand at 3610.136 kb on - strand, within DvMF_2858 at 3610.219 kb on + strand, within DvMF_2858 at 3610.414 kb on - strand, within DvMF_2858 at 3610.469 kb on - strand, within DvMF_2858 at 3610.504 kb on - strand, within DvMF_2858 at 3610.728 kb on - strand at 3610.770 kb on - strand at 3611.437 kb on - strand, within DvMF_2859 at 3611.736 kb on - strand at 3611.976 kb on + strand, within DvMF_2860 at 3612.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 remove 3,609,925 + -0.4 3,610,007 + -0.6 3,610,136 - DvMF_2858 0.24 +0.3 3,610,219 + DvMF_2858 0.35 -0.3 3,610,414 - DvMF_2858 0.61 +0.3 3,610,469 - DvMF_2858 0.69 -0.2 3,610,504 - DvMF_2858 0.74 -1.7 3,610,728 - -0.1 3,610,770 - -0.3 3,611,437 - DvMF_2859 0.71 +2.0 3,611,736 - -0.4 3,611,976 + DvMF_2860 0.11 +0.1 3,612,318 - -0.4
Or see this region's nucleotide sequence