Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2604

Experiment: MoYLS4 media with NH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2603 and DvMF_2604 are separated by 24 nucleotidesDvMF_2604 and DvMF_2605 are separated by 156 nucleotides DvMF_2603: DvMF_2603 - hypothetical protein (RefSeq), at 3,290,980 to 3,292,089 _2603 DvMF_2604: DvMF_2604 - hypothetical protein (RefSeq), at 3,292,114 to 3,292,509 _2604 DvMF_2605: DvMF_2605 - UspA domain protein (RefSeq), at 3,292,666 to 3,293,109 _2605 Position (kb) 3292 3293Strain fitness (log2 ratio) -2 -1 0 1 2at 3291.119 kb on - strand, within DvMF_2603at 3291.598 kb on - strand, within DvMF_2603at 3291.604 kb on - strand, within DvMF_2603at 3291.648 kb on - strand, within DvMF_2603at 3292.185 kb on - strand, within DvMF_2604at 3292.280 kb on - strand, within DvMF_2604at 3292.456 kb on - strand, within DvMF_2604at 3292.460 kb on - strand, within DvMF_2604at 3292.494 kb on + strandat 3292.580 kb on - strandat 3292.761 kb on - strand, within DvMF_2605at 3292.866 kb on + strand, within DvMF_2605at 3293.024 kb on + strand, within DvMF_2605at 3293.071 kb on - strandat 3293.427 kb on + strandat 3293.427 kb on + strandat 3293.435 kb on - strandat 3293.484 kb on + strandat 3293.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4
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3,291,119 - DvMF_2603 0.13 +2.4
3,291,598 - DvMF_2603 0.56 +2.0
3,291,604 - DvMF_2603 0.56 +2.5
3,291,648 - DvMF_2603 0.60 +2.6
3,292,185 - DvMF_2604 0.18 +2.4
3,292,280 - DvMF_2604 0.42 +1.9
3,292,456 - DvMF_2604 0.86 +2.2
3,292,460 - DvMF_2604 0.87 +1.9
3,292,494 + +2.3
3,292,580 - -0.6
3,292,761 - DvMF_2605 0.21 +2.2
3,292,866 + DvMF_2605 0.45 +2.5
3,293,024 + DvMF_2605 0.81 +2.7
3,293,071 - +2.2
3,293,427 + -1.8
3,293,427 + -0.8
3,293,435 - -0.5
3,293,484 + -0.8
3,293,489 + +0.7

Or see this region's nucleotide sequence