Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1038

Experiment: MoYLS4 media with NH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1037 and DvMF_1038 are separated by 325 nucleotidesDvMF_1038 and DvMF_1039 are separated by 32 nucleotides DvMF_1037: DvMF_1037 - peptidase A24A domain protein (RefSeq), at 1,258,958 to 1,259,761 _1037 DvMF_1038: DvMF_1038 - twitching motility protein (RefSeq), at 1,260,087 to 1,261,205 _1038 DvMF_1039: DvMF_1039 - Type II secretory pathway component ExeA (predicted ATPase)-like protein (RefSeq), at 1,261,238 to 1,263,280 _1039 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -1 0 1at 1259.187 kb on - strand, within DvMF_1037at 1259.306 kb on + strand, within DvMF_1037at 1259.429 kb on + strand, within DvMF_1037at 1259.655 kb on + strand, within DvMF_1037at 1259.712 kb on - strandat 1259.758 kb on - strandat 1259.873 kb on - strandat 1260.332 kb on - strand, within DvMF_1038at 1260.549 kb on - strand, within DvMF_1038at 1260.604 kb on + strand, within DvMF_1038at 1260.663 kb on + strand, within DvMF_1038at 1260.717 kb on - strand, within DvMF_1038at 1260.784 kb on - strand, within DvMF_1038at 1260.993 kb on - strand, within DvMF_1038at 1261.044 kb on - strand, within DvMF_1038at 1261.095 kb on + strandat 1261.511 kb on - strand, within DvMF_1039at 1261.797 kb on + strand, within DvMF_1039at 1261.830 kb on + strand, within DvMF_1039at 1261.883 kb on + strand, within DvMF_1039at 1261.955 kb on - strand, within DvMF_1039at 1262.011 kb on + strand, within DvMF_1039

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4
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1,259,187 - DvMF_1037 0.28 -1.2
1,259,306 + DvMF_1037 0.43 -0.6
1,259,429 + DvMF_1037 0.59 -0.4
1,259,655 + DvMF_1037 0.87 -0.5
1,259,712 - -0.5
1,259,758 - -0.4
1,259,873 - -0.4
1,260,332 - DvMF_1038 0.22 -0.4
1,260,549 - DvMF_1038 0.41 -0.8
1,260,604 + DvMF_1038 0.46 -0.3
1,260,663 + DvMF_1038 0.51 -1.1
1,260,717 - DvMF_1038 0.56 -0.0
1,260,784 - DvMF_1038 0.62 -0.5
1,260,993 - DvMF_1038 0.81 -0.1
1,261,044 - DvMF_1038 0.86 -1.1
1,261,095 + -0.0
1,261,511 - DvMF_1039 0.13 -0.9
1,261,797 + DvMF_1039 0.27 +0.0
1,261,830 + DvMF_1039 0.29 -0.5
1,261,883 + DvMF_1039 0.32 -0.1
1,261,955 - DvMF_1039 0.35 -0.3
1,262,011 + DvMF_1039 0.38 +0.4

Or see this region's nucleotide sequence