Experiment: MoYLS4 media with NH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1035 and DvMF_1036 are separated by 131 nucleotides DvMF_1036 and DvMF_1037 are separated by 183 nucleotides DvMF_1037 and DvMF_1038 are separated by 325 nucleotides
DvMF_1035: DvMF_1035 - hypothetical protein (RefSeq), at 1,257,393 to 1,258,034
_1035
DvMF_1036: DvMF_1036 - Lytic transglycosylase catalytic (RefSeq), at 1,258,166 to 1,258,774
_1036
DvMF_1037: DvMF_1037 - peptidase A24A domain protein (RefSeq), at 1,258,958 to 1,259,761
_1037
DvMF_1038: DvMF_1038 - twitching motility protein (RefSeq), at 1,260,087 to 1,261,205
_1038
Position (kb)
1258
1259
1260 Strain fitness (log2 ratio)
-1
0
1 at 1258.023 kb on - strand at 1258.445 kb on - strand, within DvMF_1036 at 1258.581 kb on - strand, within DvMF_1036 at 1259.187 kb on - strand, within DvMF_1037 at 1259.306 kb on + strand, within DvMF_1037 at 1259.429 kb on + strand, within DvMF_1037 at 1259.655 kb on + strand, within DvMF_1037 at 1259.712 kb on - strand at 1259.758 kb on - strand at 1259.873 kb on - strand at 1260.332 kb on - strand, within DvMF_1038 at 1260.549 kb on - strand, within DvMF_1038 at 1260.604 kb on + strand, within DvMF_1038 at 1260.663 kb on + strand, within DvMF_1038 at 1260.717 kb on - strand, within DvMF_1038
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 remove 1,258,023 - -0.7 1,258,445 - DvMF_1036 0.46 +0.2 1,258,581 - DvMF_1036 0.68 -0.3 1,259,187 - DvMF_1037 0.28 -1.2 1,259,306 + DvMF_1037 0.43 -0.6 1,259,429 + DvMF_1037 0.59 -0.4 1,259,655 + DvMF_1037 0.87 -0.5 1,259,712 - -0.5 1,259,758 - -0.4 1,259,873 - -0.4 1,260,332 - DvMF_1038 0.22 -0.4 1,260,549 - DvMF_1038 0.41 -0.8 1,260,604 + DvMF_1038 0.46 -0.3 1,260,663 + DvMF_1038 0.51 -1.1 1,260,717 - DvMF_1038 0.56 -0.0
Or see this region's nucleotide sequence