Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0320

Experiment: MoYLS4 media with NH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0318 and DvMF_0319 are separated by 209 nucleotidesDvMF_0319 and DvMF_0320 are separated by 10 nucleotidesDvMF_0320 and DvMF_0321 are separated by 525 nucleotides DvMF_0318: DvMF_0318 - Exonuclease RNase T and DNA polymerase III (RefSeq), at 369,894 to 370,697 _0318 DvMF_0319: DvMF_0319 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 370,907 to 371,416 _0319 DvMF_0320: DvMF_0320 - Formate dehydrogenase (RefSeq), at 371,427 to 373,529 _0320 DvMF_0321: DvMF_0321 - iron-containing alcohol dehydrogenase (RefSeq), at 374,055 to 375,236 _0321 Position (kb) 371 372 373 374Strain fitness (log2 ratio) -2 -1 0 1at 370.509 kb on - strand, within DvMF_0318at 370.513 kb on + strand, within DvMF_0318at 370.559 kb on - strand, within DvMF_0318at 370.637 kb on - strandat 370.796 kb on - strandat 370.899 kb on + strandat 370.956 kb on - strandat 371.266 kb on - strand, within DvMF_0319at 371.295 kb on + strand, within DvMF_0319at 371.344 kb on - strand, within DvMF_0319at 371.434 kb on - strandat 371.443 kb on + strandat 371.451 kb on - strandat 371.542 kb on + strandat 371.542 kb on + strandat 371.550 kb on - strandat 371.775 kb on - strand, within DvMF_0320at 371.779 kb on + strand, within DvMF_0320at 371.785 kb on - strand, within DvMF_0320at 371.862 kb on - strand, within DvMF_0320at 371.934 kb on + strand, within DvMF_0320at 372.016 kb on + strand, within DvMF_0320at 372.233 kb on - strand, within DvMF_0320at 372.376 kb on + strand, within DvMF_0320at 372.737 kb on - strand, within DvMF_0320at 372.762 kb on - strand, within DvMF_0320at 372.777 kb on - strand, within DvMF_0320at 372.842 kb on + strand, within DvMF_0320at 372.869 kb on - strand, within DvMF_0320at 372.982 kb on + strand, within DvMF_0320at 372.982 kb on + strand, within DvMF_0320at 372.990 kb on - strand, within DvMF_0320at 373.154 kb on + strand, within DvMF_0320at 373.162 kb on - strand, within DvMF_0320at 373.184 kb on + strand, within DvMF_0320at 373.187 kb on - strand, within DvMF_0320at 373.238 kb on - strand, within DvMF_0320at 373.398 kb on + strandat 373.413 kb on - strandat 373.413 kb on - strandat 373.444 kb on + strandat 373.477 kb on - strandat 373.519 kb on - strandat 373.519 kb on - strandat 373.535 kb on + strandat 373.666 kb on - strandat 373.781 kb on - strandat 373.852 kb on - strandat 373.930 kb on + strandat 373.990 kb on - strandat 373.990 kb on - strandat 373.990 kb on - strandat 374.038 kb on - strandat 374.072 kb on + strandat 374.072 kb on + strandat 374.072 kb on + strandat 374.095 kb on + strandat 374.103 kb on - strandat 374.158 kb on + strandat 374.158 kb on + strandat 374.158 kb on + strandat 374.270 kb on - strand, within DvMF_0321at 374.341 kb on + strand, within DvMF_0321

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4
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370,509 - DvMF_0318 0.76 -1.1
370,513 + DvMF_0318 0.77 -0.1
370,559 - DvMF_0318 0.83 -1.0
370,637 - +0.8
370,796 - -0.4
370,899 + -0.1
370,956 - -0.9
371,266 - DvMF_0319 0.70 -0.5
371,295 + DvMF_0319 0.76 -0.4
371,344 - DvMF_0319 0.86 -1.5
371,434 - -0.5
371,443 + -0.2
371,451 - -0.3
371,542 + -0.6
371,542 + +0.3
371,550 - +0.5
371,775 - DvMF_0320 0.17 -0.9
371,779 + DvMF_0320 0.17 -0.6
371,785 - DvMF_0320 0.17 -1.1
371,862 - DvMF_0320 0.21 -0.6
371,934 + DvMF_0320 0.24 -2.6
372,016 + DvMF_0320 0.28 +0.8
372,233 - DvMF_0320 0.38 -0.3
372,376 + DvMF_0320 0.45 -0.6
372,737 - DvMF_0320 0.62 -1.0
372,762 - DvMF_0320 0.63 +0.9
372,777 - DvMF_0320 0.64 -1.0
372,842 + DvMF_0320 0.67 -0.1
372,869 - DvMF_0320 0.69 -1.5
372,982 + DvMF_0320 0.74 +0.0
372,982 + DvMF_0320 0.74 -0.7
372,990 - DvMF_0320 0.74 -0.6
373,154 + DvMF_0320 0.82 +0.1
373,162 - DvMF_0320 0.83 -1.2
373,184 + DvMF_0320 0.84 -1.0
373,187 - DvMF_0320 0.84 -0.6
373,238 - DvMF_0320 0.86 -1.2
373,398 + -0.2
373,413 - -1.7
373,413 - -1.2
373,444 + +0.8
373,477 - +0.6
373,519 - -0.8
373,519 - -1.5
373,535 + -0.5
373,666 - -0.3
373,781 - -0.5
373,852 - -0.5
373,930 + -0.5
373,990 - -0.5
373,990 - +0.8
373,990 - -0.5
374,038 - -0.3
374,072 + -0.1
374,072 + -0.4
374,072 + -0.5
374,095 + -1.2
374,103 - -0.1
374,158 + -0.1
374,158 + -0.6
374,158 + -0.4
374,270 - DvMF_0321 0.18 +0.1
374,341 + DvMF_0321 0.24 -0.5

Or see this region's nucleotide sequence