Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldh and b1396 are separated by 411 nucleotides b1396 and tRNA-Glu are separated by 143 nucleotides tRNA-Glu and DVU0602 are separated by 88 nucleotides DVU0602 and DVU0603 are separated by 228 nucleotides DVU0603 and DVU0604 overlap by 4 nucleotides
DVU0600: ldh - L-lactate dehydrogenase (TIGR), at 670,757 to 671,686
ldh
DVU0601: b1396 - phenylacetic acid degradation protein PaaI (TIGR), at 672,098 to 672,532
b1396
DVU_tRNA-Glu-1: tRNA-Glu - tRNA with anticodon TTC for Glu (VIMSS-AUTO), at 672,676 to 672,752
tRNA-Glu
DVU0602: DVU0602 - hypothetical protein (TIGR), at 672,841 to 673,203
DVU0602
DVU0603: DVU0603 - hypothetical protein (TIGR), at 673,432 to 673,698
DVU0603
DVU0604: DVU0604 - hypothetical protein (TIGR), at 673,695 to 673,826
DVU0604
Position (kb) 672
673 Strain fitness (log2 ratio) -2
-1
0
1 at 671.680 kb on + strand at 671.688 kb on - strand at 671.704 kb on - strand at 671.735 kb on + strand at 671.738 kb on - strand at 671.870 kb on + strand at 671.994 kb on + strand at 672.072 kb on + strand at 672.072 kb on + strand at 672.082 kb on + strand at 672.149 kb on - strand, within b1396 at 672.185 kb on + strand, within b1396 at 672.193 kb on - strand, within b1396 at 672.230 kb on + strand, within b1396 at 672.231 kb on - strand, within b1396 at 672.231 kb on - strand, within b1396 at 672.231 kb on - strand, within b1396 at 672.272 kb on + strand, within b1396 at 672.336 kb on + strand, within b1396 at 672.416 kb on + strand, within b1396 at 672.422 kb on - strand, within b1396 at 672.435 kb on + strand, within b1396 at 672.522 kb on - strand at 672.760 kb on - strand at 673.491 kb on + strand, within DVU0603 at 673.509 kb on - strand, within DVU0603 at 673.613 kb on - strand, within DVU0603
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 671,680 + +0.6 671,688 - +1.3 671,704 - +1.1 671,735 + +1.1 671,738 - +1.7 671,870 + +0.1 671,994 + -0.8 672,072 + -1.3 672,072 + +0.5 672,082 + -0.8 672,149 - b1396 DVU0601 0.12 +0.2 672,185 + b1396 DVU0601 0.20 -0.4 672,193 - b1396 DVU0601 0.22 +0.9 672,230 + b1396 DVU0601 0.30 -2.3 672,231 - b1396 DVU0601 0.31 +0.8 672,231 - b1396 DVU0601 0.31 +0.7 672,231 - b1396 DVU0601 0.31 -0.6 672,272 + b1396 DVU0601 0.40 +0.8 672,336 + b1396 DVU0601 0.55 -0.2 672,416 + b1396 DVU0601 0.73 -1.1 672,422 - b1396 DVU0601 0.74 -1.0 672,435 + b1396 DVU0601 0.77 -0.8 672,522 - -1.3 672,760 - +0.8 673,491 + DVU0603 0.22 +0.4 673,509 - DVU0603 0.29 +1.0 673,613 - DVU0603 0.68 -1.9
Or see this region's nucleotide sequence