Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0051

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0050 and DVUA0051 overlap by 4 nucleotidesDVUA0051 and DVUA0052 are separated by 181 nucleotides DVUA0050: DVUA0050 - conserved hypothetical protein (TIGR), at 61,246 to 62,502 DVUA0050 DVUA0051: DVUA0051 - glycosyl transferase, group 1 family protein (TIGR), at 62,499 to 63,887 DVUA0051 DVUA0052: DVUA0052 - conserved hypothetical protein (TIGR), at 64,069 to 64,737 DVUA0052 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2 3at 61.543 kb on + strand, within DVUA0050at 61.551 kb on - strand, within DVUA0050at 61.551 kb on - strand, within DVUA0050at 61.551 kb on - strand, within DVUA0050at 61.672 kb on - strand, within DVUA0050at 61.672 kb on - strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.695 kb on + strand, within DVUA0050at 61.701 kb on - strand, within DVUA0050at 61.708 kb on + strand, within DVUA0050at 61.712 kb on + strand, within DVUA0050at 61.738 kb on - strand, within DVUA0050at 61.748 kb on - strand, within DVUA0050at 61.844 kb on - strand, within DVUA0050at 61.867 kb on - strand, within DVUA0050at 61.873 kb on - strand, within DVUA0050at 61.919 kb on - strand, within DVUA0050at 61.922 kb on + strand, within DVUA0050at 61.940 kb on - strand, within DVUA0050at 61.940 kb on - strand, within DVUA0050at 61.950 kb on - strand, within DVUA0050at 61.993 kb on - strand, within DVUA0050at 62.061 kb on - strand, within DVUA0050at 62.126 kb on + strand, within DVUA0050at 62.175 kb on + strand, within DVUA0050at 62.175 kb on + strand, within DVUA0050at 62.206 kb on - strand, within DVUA0050at 62.206 kb on - strand, within DVUA0050at 62.225 kb on + strand, within DVUA0050at 62.355 kb on - strand, within DVUA0050at 62.370 kb on + strand, within DVUA0050at 62.484 kb on + strandat 62.552 kb on + strandat 62.697 kb on - strand, within DVUA0051at 62.852 kb on + strand, within DVUA0051at 62.983 kb on + strand, within DVUA0051at 63.079 kb on + strand, within DVUA0051at 63.079 kb on + strand, within DVUA0051at 63.270 kb on + strand, within DVUA0051at 63.323 kb on - strand, within DVUA0051at 63.335 kb on - strand, within DVUA0051at 63.335 kb on - strand, within DVUA0051at 63.468 kb on + strand, within DVUA0051at 63.469 kb on + strand, within DVUA0051at 63.524 kb on + strand, within DVUA0051at 63.524 kb on + strand, within DVUA0051at 63.524 kb on + strand, within DVUA0051at 63.592 kb on + strand, within DVUA0051at 63.829 kb on + strandat 63.829 kb on + strandat 63.876 kb on + strandat 63.891 kb on - strandat 63.931 kb on + strandat 63.941 kb on - strandat 63.955 kb on + strandat 64.031 kb on - strandat 64.208 kb on + strand, within DVUA0052at 64.208 kb on + strand, within DVUA0052at 64.208 kb on + strand, within DVUA0052at 64.208 kb on + strand, within DVUA0052at 64.216 kb on - strand, within DVUA0052at 64.216 kb on - strand, within DVUA0052at 64.236 kb on + strand, within DVUA0052at 64.236 kb on + strand, within DVUA0052at 64.282 kb on + strand, within DVUA0052at 64.333 kb on + strand, within DVUA0052at 64.361 kb on - strand, within DVUA0052at 64.364 kb on - strand, within DVUA0052at 64.413 kb on + strand, within DVUA0052at 64.445 kb on + strand, within DVUA0052at 64.445 kb on + strand, within DVUA0052at 64.458 kb on - strand, within DVUA0052at 64.518 kb on + strand, within DVUA0052at 64.650 kb on + strand, within DVUA0052at 64.701 kb on + strandat 64.701 kb on + strandat 64.709 kb on - strandat 64.714 kb on + strandat 64.717 kb on - strandat 64.724 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.740 kb on - strandat 64.768 kb on - strandat 64.779 kb on - strandat 64.779 kb on - strandat 64.781 kb on + strandat 64.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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61,543 + DVUA0050 0.24 -0.7
61,551 - DVUA0050 0.24 +0.1
61,551 - DVUA0050 0.24 +1.4
61,551 - DVUA0050 0.24 -0.6
61,672 - DVUA0050 0.34 -0.2
61,672 - DVUA0050 0.34 +1.2
61,693 + DVUA0050 0.36 -0.8
61,693 + DVUA0050 0.36 +0.8
61,693 + DVUA0050 0.36 -1.0
61,693 + DVUA0050 0.36 +2.4
61,695 + DVUA0050 0.36 -1.5
61,701 - DVUA0050 0.36 -1.4
61,708 + DVUA0050 0.37 -0.9
61,712 + DVUA0050 0.37 -0.6
61,738 - DVUA0050 0.39 -1.1
61,748 - DVUA0050 0.40 -0.3
61,844 - DVUA0050 0.48 +2.8
61,867 - DVUA0050 0.49 +0.7
61,873 - DVUA0050 0.50 +0.1
61,919 - DVUA0050 0.54 -0.6
61,922 + DVUA0050 0.54 +0.9
61,940 - DVUA0050 0.55 +1.8
61,940 - DVUA0050 0.55 -2.3
61,950 - DVUA0050 0.56 -1.7
61,993 - DVUA0050 0.59 -1.3
62,061 - DVUA0050 0.65 -0.6
62,126 + DVUA0050 0.70 -0.8
62,175 + DVUA0050 0.74 -1.8
62,175 + DVUA0050 0.74 -0.2
62,206 - DVUA0050 0.76 -0.3
62,206 - DVUA0050 0.76 -1.9
62,225 + DVUA0050 0.78 +0.2
62,355 - DVUA0050 0.88 -1.3
62,370 + DVUA0050 0.89 -0.4
62,484 + +2.1
62,552 + -1.0
62,697 - DVUA0051 0.14 -2.6
62,852 + DVUA0051 0.25 -0.9
62,983 + DVUA0051 0.35 -0.2
63,079 + DVUA0051 0.42 -0.9
63,079 + DVUA0051 0.42 -2.3
63,270 + DVUA0051 0.56 -1.7
63,323 - DVUA0051 0.59 -1.0
63,335 - DVUA0051 0.60 +1.6
63,335 - DVUA0051 0.60 -1.3
63,468 + DVUA0051 0.70 -0.3
63,469 + DVUA0051 0.70 -2.2
63,524 + DVUA0051 0.74 -0.7
63,524 + DVUA0051 0.74 -0.2
63,524 + DVUA0051 0.74 +0.3
63,592 + DVUA0051 0.79 -0.5
63,829 + -0.4
63,829 + -0.9
63,876 + +0.3
63,891 - -0.4
63,931 + -1.2
63,941 - -1.6
63,955 + -2.3
64,031 - -1.7
64,208 + DVUA0052 0.21 -1.0
64,208 + DVUA0052 0.21 +0.4
64,208 + DVUA0052 0.21 -1.6
64,208 + DVUA0052 0.21 -0.8
64,216 - DVUA0052 0.22 -0.9
64,216 - DVUA0052 0.22 -1.1
64,236 + DVUA0052 0.25 +1.2
64,236 + DVUA0052 0.25 -1.1
64,282 + DVUA0052 0.32 +0.3
64,333 + DVUA0052 0.39 -0.0
64,361 - DVUA0052 0.44 -1.1
64,364 - DVUA0052 0.44 +0.6
64,413 + DVUA0052 0.51 -1.6
64,445 + DVUA0052 0.56 -0.9
64,445 + DVUA0052 0.56 -1.0
64,458 - DVUA0052 0.58 -0.6
64,518 + DVUA0052 0.67 +1.6
64,650 + DVUA0052 0.87 -1.1
64,701 + +0.2
64,701 + -1.1
64,709 - +0.1
64,714 + +1.6
64,717 - -0.5
64,724 + +1.8
64,732 + -1.3
64,732 + -0.5
64,740 - -1.3
64,768 - +1.2
64,779 - -0.3
64,779 - -1.5
64,781 + +1.2
64,835 + -0.1

Or see this region's nucleotide sequence