Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0054

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0052 and DVUA0053 are separated by 250 nucleotidesDVUA0053 and DVUA0054 overlap by 4 nucleotidesDVUA0054 and DVUA0055 overlap by 4 nucleotidesDVUA0055 and DVUA0056 overlap by 11 nucleotides DVUA0052: DVUA0052 - conserved hypothetical protein (TIGR), at 64,069 to 64,737 DVUA0052 DVUA0053: DVUA0053 - conserved hypothetical protein (TIGR), at 64,988 to 65,575 DVUA0053 DVUA0054: DVUA0054 - glycosyl transferase, group 1 family protein (TIGR), at 65,572 to 66,972 DVUA0054 DVUA0055: DVUA0055 - membrane protein, putative (TIGR), at 66,969 to 67,922 DVUA0055 DVUA0056: DVUA0056 - hypothetical protein (TIGR), at 67,912 to 68,532 DVUA0056 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 64.650 kb on + strand, within DVUA0052at 64.701 kb on + strandat 64.701 kb on + strandat 64.709 kb on - strandat 64.714 kb on + strandat 64.717 kb on - strandat 64.724 kb on + strandat 64.732 kb on + strandat 64.732 kb on + strandat 64.740 kb on - strandat 64.768 kb on - strandat 64.779 kb on - strandat 64.779 kb on - strandat 64.781 kb on + strandat 64.835 kb on + strandat 65.030 kb on + strandat 65.035 kb on + strandat 65.038 kb on - strandat 65.043 kb on - strandat 65.121 kb on + strand, within DVUA0053at 65.138 kb on + strand, within DVUA0053at 65.153 kb on + strand, within DVUA0053at 65.161 kb on - strand, within DVUA0053at 65.259 kb on - strand, within DVUA0053at 65.264 kb on - strand, within DVUA0053at 65.327 kb on + strand, within DVUA0053at 65.444 kb on + strand, within DVUA0053at 65.452 kb on - strand, within DVUA0053at 65.516 kb on + strand, within DVUA0053at 65.597 kb on + strandat 65.605 kb on - strandat 65.611 kb on - strandat 65.637 kb on + strandat 65.649 kb on - strandat 65.895 kb on + strand, within DVUA0054at 65.903 kb on - strand, within DVUA0054at 65.903 kb on - strand, within DVUA0054at 65.903 kb on - strand, within DVUA0054at 65.921 kb on + strand, within DVUA0054at 65.929 kb on - strand, within DVUA0054at 65.980 kb on + strand, within DVUA0054at 66.012 kb on + strand, within DVUA0054at 66.045 kb on - strand, within DVUA0054at 66.055 kb on - strand, within DVUA0054at 66.147 kb on - strand, within DVUA0054at 66.149 kb on + strand, within DVUA0054at 66.221 kb on + strand, within DVUA0054at 66.292 kb on + strand, within DVUA0054at 66.344 kb on - strand, within DVUA0054at 66.401 kb on - strand, within DVUA0054at 66.413 kb on + strand, within DVUA0054at 66.464 kb on - strand, within DVUA0054at 66.479 kb on - strand, within DVUA0054at 66.487 kb on - strand, within DVUA0054at 66.507 kb on + strand, within DVUA0054at 66.521 kb on + strand, within DVUA0054at 66.543 kb on + strand, within DVUA0054at 66.574 kb on - strand, within DVUA0054at 66.651 kb on - strand, within DVUA0054at 66.743 kb on + strand, within DVUA0054at 66.743 kb on + strand, within DVUA0054at 66.751 kb on - strand, within DVUA0054at 66.769 kb on - strand, within DVUA0054at 66.907 kb on + strandat 66.921 kb on + strandat 67.007 kb on - strandat 67.061 kb on + strandat 67.102 kb on + strand, within DVUA0055at 67.102 kb on + strand, within DVUA0055at 67.105 kb on + strand, within DVUA0055at 67.108 kb on - strand, within DVUA0055at 67.117 kb on + strand, within DVUA0055at 67.125 kb on - strand, within DVUA0055at 67.137 kb on + strand, within DVUA0055at 67.172 kb on - strand, within DVUA0055at 67.231 kb on + strand, within DVUA0055at 67.231 kb on + strand, within DVUA0055at 67.239 kb on - strand, within DVUA0055at 67.239 kb on - strand, within DVUA0055at 67.275 kb on + strand, within DVUA0055at 67.370 kb on + strand, within DVUA0055at 67.370 kb on + strand, within DVUA0055at 67.370 kb on + strand, within DVUA0055at 67.370 kb on + strand, within DVUA0055at 67.378 kb on - strand, within DVUA0055at 67.378 kb on - strand, within DVUA0055at 67.446 kb on + strand, within DVUA0055at 67.651 kb on + strand, within DVUA0055at 67.803 kb on + strand, within DVUA0055at 67.803 kb on + strand, within DVUA0055at 67.874 kb on + strandat 67.892 kb on - strandat 67.911 kb on + strandat 67.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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64,650 + DVUA0052 0.87 -1.1
64,701 + +0.2
64,701 + -1.1
64,709 - +0.1
64,714 + +1.6
64,717 - -0.5
64,724 + +1.8
64,732 + -1.3
64,732 + -0.5
64,740 - -1.3
64,768 - +1.2
64,779 - -0.3
64,779 - -1.5
64,781 + +1.2
64,835 + -0.1
65,030 + -0.9
65,035 + -0.8
65,038 - -0.8
65,043 - +1.4
65,121 + DVUA0053 0.23 -1.8
65,138 + DVUA0053 0.26 -0.5
65,153 + DVUA0053 0.28 -1.1
65,161 - DVUA0053 0.29 -0.9
65,259 - DVUA0053 0.46 -0.7
65,264 - DVUA0053 0.47 -1.3
65,327 + DVUA0053 0.58 +0.8
65,444 + DVUA0053 0.78 -1.4
65,452 - DVUA0053 0.79 -3.5
65,516 + DVUA0053 0.90 -0.8
65,597 + +0.4
65,605 - -0.7
65,611 - -0.7
65,637 + -1.1
65,649 - -1.7
65,895 + DVUA0054 0.23 -0.4
65,903 - DVUA0054 0.24 +0.2
65,903 - DVUA0054 0.24 -1.4
65,903 - DVUA0054 0.24 -0.1
65,921 + DVUA0054 0.25 +0.6
65,929 - DVUA0054 0.25 +0.8
65,980 + DVUA0054 0.29 +0.2
66,012 + DVUA0054 0.31 -0.8
66,045 - DVUA0054 0.34 +1.2
66,055 - DVUA0054 0.34 -1.8
66,147 - DVUA0054 0.41 -0.8
66,149 + DVUA0054 0.41 +1.6
66,221 + DVUA0054 0.46 -2.9
66,292 + DVUA0054 0.51 +0.9
66,344 - DVUA0054 0.55 +0.4
66,401 - DVUA0054 0.59 +2.0
66,413 + DVUA0054 0.60 +0.6
66,464 - DVUA0054 0.64 -0.7
66,479 - DVUA0054 0.65 +0.6
66,487 - DVUA0054 0.65 +0.1
66,507 + DVUA0054 0.67 -1.1
66,521 + DVUA0054 0.68 +2.0
66,543 + DVUA0054 0.69 -0.4
66,574 - DVUA0054 0.72 +0.9
66,651 - DVUA0054 0.77 -0.7
66,743 + DVUA0054 0.84 -0.4
66,743 + DVUA0054 0.84 -0.4
66,751 - DVUA0054 0.84 +0.1
66,769 - DVUA0054 0.85 -0.5
66,907 + -0.2
66,921 + +1.6
67,007 - +0.6
67,061 + -1.0
67,102 + DVUA0055 0.14 -1.8
67,102 + DVUA0055 0.14 +4.6
67,105 + DVUA0055 0.14 +1.4
67,108 - DVUA0055 0.15 +0.2
67,117 + DVUA0055 0.16 -1.5
67,125 - DVUA0055 0.16 -1.2
67,137 + DVUA0055 0.18 -0.4
67,172 - DVUA0055 0.21 -0.0
67,231 + DVUA0055 0.27 -0.1
67,231 + DVUA0055 0.27 -0.6
67,239 - DVUA0055 0.28 -0.9
67,239 - DVUA0055 0.28 -0.9
67,275 + DVUA0055 0.32 +1.1
67,370 + DVUA0055 0.42 -1.7
67,370 + DVUA0055 0.42 +1.4
67,370 + DVUA0055 0.42 +2.0
67,370 + DVUA0055 0.42 -2.3
67,378 - DVUA0055 0.43 +1.6
67,378 - DVUA0055 0.43 +1.5
67,446 + DVUA0055 0.50 +1.4
67,651 + DVUA0055 0.71 -1.3
67,803 + DVUA0055 0.87 -0.8
67,803 + DVUA0055 0.87 -0.2
67,874 + +1.2
67,892 - +1.2
67,911 + -0.9
67,966 + -1.8

Or see this region's nucleotide sequence