Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ahcY and DVU0608 are separated by 152 nucleotides DVU0608 and DVU0609 are separated by 155 nucleotides DVU0609 and DVU0610 overlap by 4 nucleotides
DVU0607: ahcY - adenosylhomocysteinase (TIGR), at 675,159 to 676,598
ahcY
DVU0608: DVU0608 - methyl-accepting chemotaxis protein (TIGR), at 676,751 to 678,784
DVU0608
DVU0609: DVU0609 - lipoprotein, putative (TIGR), at 678,940 to 679,575
DVU0609
DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492
DVU0610
Position (kb) 676
677
678
679 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.723 kb on + strand at 676.766 kb on - strand at 676.786 kb on + strand at 676.810 kb on + strand at 676.978 kb on + strand, within DVU0608 at 677.008 kb on + strand, within DVU0608 at 677.049 kb on + strand, within DVU0608 at 677.049 kb on + strand, within DVU0608 at 677.054 kb on + strand, within DVU0608 at 677.054 kb on + strand, within DVU0608 at 677.057 kb on - strand, within DVU0608 at 677.253 kb on + strand, within DVU0608 at 677.271 kb on - strand, within DVU0608 at 677.350 kb on + strand, within DVU0608 at 677.406 kb on - strand, within DVU0608 at 677.523 kb on + strand, within DVU0608 at 677.524 kb on + strand, within DVU0608 at 677.535 kb on + strand, within DVU0608 at 677.585 kb on - strand, within DVU0608 at 677.606 kb on - strand, within DVU0608 at 677.783 kb on - strand, within DVU0608 at 677.785 kb on + strand, within DVU0608 at 677.847 kb on + strand, within DVU0608 at 677.847 kb on + strand, within DVU0608 at 677.852 kb on + strand, within DVU0608 at 677.873 kb on + strand, within DVU0608 at 677.898 kb on - strand, within DVU0608 at 677.934 kb on - strand, within DVU0608 at 677.940 kb on - strand, within DVU0608 at 677.945 kb on - strand, within DVU0608 at 677.962 kb on + strand, within DVU0608 at 677.986 kb on - strand, within DVU0608 at 677.993 kb on - strand, within DVU0608 at 678.021 kb on + strand, within DVU0608 at 678.029 kb on - strand, within DVU0608 at 678.062 kb on - strand, within DVU0608 at 678.096 kb on + strand, within DVU0608 at 678.096 kb on + strand, within DVU0608 at 678.101 kb on + strand, within DVU0608 at 678.104 kb on - strand, within DVU0608 at 678.104 kb on - strand, within DVU0608 at 678.182 kb on + strand, within DVU0608 at 678.250 kb on - strand, within DVU0608 at 678.450 kb on + strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.487 kb on - strand, within DVU0608 at 678.505 kb on - strand, within DVU0608 at 678.546 kb on + strand, within DVU0608 at 678.554 kb on - strand, within DVU0608 at 678.602 kb on + strand at 678.612 kb on + strand at 678.624 kb on + strand at 678.695 kb on + strand at 678.703 kb on - strand at 678.821 kb on + strand at 678.992 kb on + strand at 679.024 kb on - strand, within DVU0609 at 679.206 kb on - strand, within DVU0609 at 679.384 kb on - strand, within DVU0609 at 679.443 kb on + strand, within DVU0609 at 679.491 kb on + strand, within DVU0609 at 679.658 kb on - strand at 679.700 kb on + strand, within DVU0610 at 679.717 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 676,723 + -0.8 676,766 - +2.4 676,786 + -1.4 676,810 + -0.2 676,978 + DVU0608 0.11 +2.4 677,008 + DVU0608 0.13 -0.6 677,049 + DVU0608 0.15 +0.3 677,049 + DVU0608 0.15 +0.8 677,054 + DVU0608 0.15 +1.7 677,054 + DVU0608 0.15 -0.6 677,057 - DVU0608 0.15 +0.6 677,253 + DVU0608 0.25 -0.5 677,271 - DVU0608 0.26 -1.6 677,350 + DVU0608 0.29 +0.1 677,406 - DVU0608 0.32 -0.5 677,523 + DVU0608 0.38 -0.0 677,524 + DVU0608 0.38 +0.3 677,535 + DVU0608 0.39 -1.6 677,585 - DVU0608 0.41 +1.9 677,606 - DVU0608 0.42 -0.0 677,783 - DVU0608 0.51 -0.5 677,785 + DVU0608 0.51 -1.0 677,847 + DVU0608 0.54 -1.1 677,847 + DVU0608 0.54 +0.4 677,852 + DVU0608 0.54 -1.5 677,873 + DVU0608 0.55 -0.0 677,898 - DVU0608 0.56 -0.9 677,934 - DVU0608 0.58 +0.6 677,940 - DVU0608 0.58 -1.0 677,945 - DVU0608 0.59 +2.4 677,962 + DVU0608 0.60 -0.5 677,986 - DVU0608 0.61 +0.7 677,993 - DVU0608 0.61 +0.4 678,021 + DVU0608 0.62 -2.5 678,029 - DVU0608 0.63 -0.9 678,062 - DVU0608 0.64 -1.4 678,096 + DVU0608 0.66 +0.5 678,096 + DVU0608 0.66 -1.9 678,101 + DVU0608 0.66 +1.0 678,104 - DVU0608 0.67 +1.0 678,104 - DVU0608 0.67 -1.4 678,182 + DVU0608 0.70 -1.5 678,250 - DVU0608 0.74 -2.7 678,450 + DVU0608 0.84 -0.6 678,485 - DVU0608 0.85 -0.8 678,485 - DVU0608 0.85 -0.1 678,485 - DVU0608 0.85 -1.4 678,487 - DVU0608 0.85 -1.2 678,505 - DVU0608 0.86 -0.1 678,546 + DVU0608 0.88 +0.0 678,554 - DVU0608 0.89 -1.8 678,602 + +1.8 678,612 + -1.0 678,624 + -1.1 678,695 + +0.3 678,703 - +0.9 678,821 + +0.9 678,992 + -1.1 679,024 - DVU0609 0.13 -0.9 679,206 - DVU0609 0.42 -0.9 679,384 - DVU0609 0.70 +0.5 679,443 + DVU0609 0.79 -1.2 679,491 + DVU0609 0.87 +1.5 679,658 - -1.7 679,700 + DVU0610 0.14 -1.3 679,717 - DVU0610 0.16 +0.7 679,763 - DVU0610 0.21 -0.8 679,763 - DVU0610 0.21 +0.4 679,782 - DVU0610 0.23 -0.6 679,782 - DVU0610 0.23 -1.4
Or see this region's nucleotide sequence