Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0506 and DVU0507 are separated by 17 nucleotides DVU0507 and infB are separated by 103 nucleotides infB and DVU0509 are separated by 3 nucleotides DVU0509 and nusA are separated by 3 nucleotides
DVU0506: DVU0506 - DHH family protein (TIGR), at 578,631 to 579,632
DVU0506
DVU0507: DVU0507 - conserved hypothetical protein (TIGR), at 579,650 to 579,940
DVU0507
DVU0508: infB - translation initiation factor IF-2 (TIGR), at 580,044 to 583,283
infB
DVU0509: DVU0509 - conserved hypothetical protein (TIGR), at 583,287 to 583,517
DVU0509
DVU0510: nusA - N utilization substance protein A (TIGR), at 583,521 to 584,807
nusA
Position (kb) 580
581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 579.160 kb on + strand, within DVU0506 at 579.224 kb on + strand, within DVU0506 at 579.372 kb on + strand, within DVU0506 at 579.372 kb on + strand, within DVU0506 at 579.388 kb on + strand, within DVU0506 at 579.429 kb on - strand, within DVU0506 at 579.429 kb on - strand, within DVU0506 at 579.429 kb on - strand, within DVU0506 at 579.677 kb on + strand at 579.717 kb on - strand, within DVU0507 at 579.737 kb on + strand, within DVU0507 at 579.853 kb on + strand, within DVU0507 at 579.921 kb on - strand at 579.966 kb on - strand at 580.013 kb on - strand at 580.044 kb on + strand at 580.044 kb on + strand at 583.371 kb on - strand, within DVU0509 at 583.449 kb on - strand, within DVU0509 at 583.487 kb on - strand, within DVU0509 at 583.497 kb on - strand at 583.573 kb on - strand at 583.573 kb on - strand at 583.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 579,160 + DVU0506 0.53 -0.1 579,224 + DVU0506 0.59 -0.3 579,372 + DVU0506 0.74 -0.2 579,372 + DVU0506 0.74 +3.0 579,388 + DVU0506 0.76 -1.9 579,429 - DVU0506 0.80 +1.5 579,429 - DVU0506 0.80 -1.8 579,429 - DVU0506 0.80 -0.8 579,677 + +0.0 579,717 - DVU0507 0.23 -0.7 579,737 + DVU0507 0.30 -0.3 579,853 + DVU0507 0.70 +3.0 579,921 - -2.2 579,966 - +1.7 580,013 - +1.3 580,044 + -0.4 580,044 + -2.4 583,371 - DVU0509 0.36 +3.5 583,449 - DVU0509 0.70 -0.2 583,487 - DVU0509 0.87 +4.0 583,497 - +5.4 583,573 - +1.0 583,573 - +0.7 583,573 - +2.0
Or see this region's nucleotide sequence