Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0248 and DVU0249 are separated by 2 nucleotides DVU0249 and DVU0250 are separated by 307 nucleotides DVU0250 and DVU0251 are separated by 76 nucleotides
DVU0248: DVU0248 - sensory box histidine kinase, authentic point mutation (TIGR), at 281,313 to 283,421
DVU0248
DVU0249: DVU0249 - conserved hypothetical protein (TIGR), at 283,424 to 284,395
DVU0249
DVU0250: DVU0250 - hypothetical protein (TIGR), at 284,703 to 285,290
DVU0250
DVU0251: DVU0251 - membrane protein, putative (TIGR), at 285,367 to 286,329
DVU0251
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 282.455 kb on + strand, within DVU0248 at 282.489 kb on - strand, within DVU0248 at 282.501 kb on + strand, within DVU0248 at 282.583 kb on + strand, within DVU0248 at 282.678 kb on + strand, within DVU0248 at 282.678 kb on + strand, within DVU0248 at 282.713 kb on + strand, within DVU0248 at 282.745 kb on + strand, within DVU0248 at 282.757 kb on + strand, within DVU0248 at 282.990 kb on + strand, within DVU0248 at 282.997 kb on + strand, within DVU0248 at 282.998 kb on - strand, within DVU0248 at 282.998 kb on - strand, within DVU0248 at 283.015 kb on - strand, within DVU0248 at 283.127 kb on + strand, within DVU0248 at 283.142 kb on - strand, within DVU0248 at 283.142 kb on - strand, within DVU0248 at 283.142 kb on - strand, within DVU0248 at 283.196 kb on + strand, within DVU0248 at 283.204 kb on - strand, within DVU0248 at 283.204 kb on - strand, within DVU0248 at 283.209 kb on - strand, within DVU0248 at 283.229 kb on + strand at 283.280 kb on + strand at 283.320 kb on - strand at 283.395 kb on - strand at 283.395 kb on - strand at 283.438 kb on + strand at 283.446 kb on + strand at 283.448 kb on - strand at 283.490 kb on - strand at 283.530 kb on + strand, within DVU0249 at 283.571 kb on + strand, within DVU0249 at 283.584 kb on - strand, within DVU0249 at 283.618 kb on - strand, within DVU0249 at 283.618 kb on - strand, within DVU0249 at 283.619 kb on + strand, within DVU0249 at 283.692 kb on - strand, within DVU0249 at 283.819 kb on + strand, within DVU0249 at 283.827 kb on - strand, within DVU0249 at 283.838 kb on + strand, within DVU0249 at 283.925 kb on + strand, within DVU0249 at 283.970 kb on + strand, within DVU0249 at 283.970 kb on + strand, within DVU0249 at 283.990 kb on + strand, within DVU0249 at 284.085 kb on + strand, within DVU0249 at 284.122 kb on - strand, within DVU0249 at 284.125 kb on + strand, within DVU0249 at 284.133 kb on - strand, within DVU0249 at 284.145 kb on + strand, within DVU0249 at 284.146 kb on - strand, within DVU0249 at 284.272 kb on + strand, within DVU0249 at 284.295 kb on + strand, within DVU0249 at 284.298 kb on - strand at 284.317 kb on + strand at 284.320 kb on - strand at 284.324 kb on + strand at 284.325 kb on - strand at 284.395 kb on + strand at 284.403 kb on - strand at 284.405 kb on + strand at 284.499 kb on + strand at 284.596 kb on - strand at 284.625 kb on + strand at 284.629 kb on + strand at 284.636 kb on + strand at 284.671 kb on - strand at 284.708 kb on - strand at 284.718 kb on + strand at 284.757 kb on - strand at 284.874 kb on - strand, within DVU0250 at 284.874 kb on - strand, within DVU0250 at 284.907 kb on + strand, within DVU0250 at 284.907 kb on + strand, within DVU0250 at 284.950 kb on + strand, within DVU0250 at 284.958 kb on - strand, within DVU0250 at 285.109 kb on + strand, within DVU0250 at 285.135 kb on + strand, within DVU0250 at 285.210 kb on - strand, within DVU0250 at 285.252 kb on + strand at 285.349 kb on - strand at 285.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 282,455 + DVU0248 0.54 +2.8 282,489 - DVU0248 0.56 +2.6 282,501 + DVU0248 0.56 -0.7 282,583 + DVU0248 0.60 +4.4 282,678 + DVU0248 0.65 +2.3 282,678 + DVU0248 0.65 +0.8 282,713 + DVU0248 0.66 +2.8 282,745 + DVU0248 0.68 +2.7 282,757 + DVU0248 0.68 +3.9 282,990 + DVU0248 0.80 +4.1 282,997 + DVU0248 0.80 +4.7 282,998 - DVU0248 0.80 +2.2 282,998 - DVU0248 0.80 +3.2 283,015 - DVU0248 0.81 -1.7 283,127 + DVU0248 0.86 +0.7 283,142 - DVU0248 0.87 +1.8 283,142 - DVU0248 0.87 +0.6 283,142 - DVU0248 0.87 +3.8 283,196 + DVU0248 0.89 +3.9 283,204 - DVU0248 0.90 +1.0 283,204 - DVU0248 0.90 +4.7 283,209 - DVU0248 0.90 +2.4 283,229 + +3.8 283,280 + +2.6 283,320 - +2.9 283,395 - +3.3 283,395 - +3.8 283,438 + +1.9 283,446 + +5.7 283,448 - +0.5 283,490 - +1.0 283,530 + DVU0249 0.11 +2.7 283,571 + DVU0249 0.15 +2.0 283,584 - DVU0249 0.16 +2.6 283,618 - DVU0249 0.20 +0.6 283,618 - DVU0249 0.20 +0.2 283,619 + DVU0249 0.20 +2.1 283,692 - DVU0249 0.28 +1.7 283,819 + DVU0249 0.41 +0.6 283,827 - DVU0249 0.41 +2.4 283,838 + DVU0249 0.43 +1.4 283,925 + DVU0249 0.52 +0.4 283,970 + DVU0249 0.56 +1.1 283,970 + DVU0249 0.56 +0.7 283,990 + DVU0249 0.58 +2.1 284,085 + DVU0249 0.68 +2.7 284,122 - DVU0249 0.72 +1.8 284,125 + DVU0249 0.72 +4.0 284,133 - DVU0249 0.73 +1.3 284,145 + DVU0249 0.74 +2.5 284,146 - DVU0249 0.74 +2.7 284,272 + DVU0249 0.87 +4.0 284,295 + DVU0249 0.90 +3.8 284,298 - +2.5 284,317 + +4.0 284,320 - +3.2 284,324 + +4.5 284,325 - +2.7 284,395 + -0.9 284,403 - -2.0 284,405 + -1.8 284,499 + -0.1 284,596 - -0.5 284,625 + -0.4 284,629 + -1.9 284,636 + -0.8 284,671 - -0.6 284,708 - -1.2 284,718 + +5.6 284,757 - +0.5 284,874 - DVU0250 0.29 +11.5 284,874 - DVU0250 0.29 +11.5 284,907 + DVU0250 0.35 +11.3 284,907 + DVU0250 0.35 +11.2 284,950 + DVU0250 0.42 +11.0 284,958 - DVU0250 0.43 +11.3 285,109 + DVU0250 0.69 +11.9 285,135 + DVU0250 0.73 +11.2 285,210 - DVU0250 0.86 +8.6 285,252 + +11.4 285,349 - +6.5 285,359 + +9.3
Or see this region's nucleotide sequence