Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2686

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2684 and DVU2686 are separated by 567 nucleotidesDVU2686 and DVU2687 are separated by 336 nucleotides DVU2684: DVU2684 - hypothetical protein (TIGR), at 2,798,343 to 2,799,023 DVU2684 DVU2686: DVU2686 - peptidase, S24 family (TIGR), at 2,799,591 to 2,800,373 DVU2686 DVU2687: DVU2687 - hypothetical protein (TIGR), at 2,800,710 to 2,801,090 DVU2687 Position (kb) 2799 2800 2801Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2798.677 kb on + strand, within DVU2684at 2798.688 kb on - strand, within DVU2684at 2798.820 kb on + strand, within DVU2684at 2798.850 kb on - strand, within DVU2684at 2798.868 kb on + strand, within DVU2684at 2798.868 kb on + strand, within DVU2684at 2798.944 kb on + strand, within DVU2684at 2799.015 kb on - strandat 2799.020 kb on - strandat 2799.031 kb on + strandat 2799.039 kb on - strandat 2799.057 kb on - strandat 2799.129 kb on - strandat 2799.155 kb on + strandat 2799.174 kb on + strandat 2799.177 kb on - strandat 2799.182 kb on - strandat 2799.182 kb on - strandat 2799.205 kb on - strandat 2799.453 kb on + strandat 2799.456 kb on - strandat 2799.461 kb on - strandat 2800.380 kb on - strandat 2800.584 kb on + strandat 2800.586 kb on + strandat 2800.592 kb on - strandat 2800.615 kb on - strandat 2800.645 kb on + strandat 2800.911 kb on - strand, within DVU2687at 2800.971 kb on + strand, within DVU2687at 2800.978 kb on + strand, within DVU2687at 2800.998 kb on + strand, within DVU2687at 2801.001 kb on - strand, within DVU2687at 2801.040 kb on - strand, within DVU2687at 2801.135 kb on - strandat 2801.169 kb on - strandat 2801.342 kb on + strandat 2801.342 kb on + strandat 2801.350 kb on - strandat 2801.350 kb on - strandat 2801.352 kb on + strandat 2801.359 kb on + strandat 2801.360 kb on - strandat 2801.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,798,677 + DVU2684 0.49 -1.7
2,798,688 - DVU2684 0.51 +0.2
2,798,820 + DVU2684 0.70 -2.1
2,798,850 - DVU2684 0.74 -0.7
2,798,868 + DVU2684 0.77 +1.9
2,798,868 + DVU2684 0.77 -1.5
2,798,944 + DVU2684 0.88 -0.1
2,799,015 - -0.4
2,799,020 - -1.0
2,799,031 + +0.8
2,799,039 - +1.4
2,799,057 - -0.6
2,799,129 - +1.6
2,799,155 + +0.5
2,799,174 + +1.8
2,799,177 - -0.9
2,799,182 - -2.1
2,799,182 - -0.5
2,799,205 - +0.2
2,799,453 + -1.1
2,799,456 - +0.9
2,799,461 - +0.2
2,800,380 - -0.3
2,800,584 + -3.5
2,800,586 + -2.2
2,800,592 - -2.2
2,800,615 - +0.3
2,800,645 + -1.0
2,800,911 - DVU2687 0.53 -0.8
2,800,971 + DVU2687 0.69 -0.4
2,800,978 + DVU2687 0.70 -1.8
2,800,998 + DVU2687 0.76 -1.2
2,801,001 - DVU2687 0.76 +1.4
2,801,040 - DVU2687 0.87 -1.1
2,801,135 - -1.4
2,801,169 - -0.7
2,801,342 + +1.3
2,801,342 + -0.4
2,801,350 - -0.9
2,801,350 - -0.6
2,801,352 + +1.4
2,801,359 + -0.3
2,801,360 - -0.7
2,801,367 - -0.8

Or see this region's nucleotide sequence