Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2325

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2324 and merP are separated by 272 nucleotidesmerP and DVU2326 are separated by 96 nucleotidesDVU2326 and DORF17147 overlap by 1 nucleotides DVU2324: DVU2324 - copper-translocating P-type ATPase (TIGR), at 2,419,638 to 2,422,355 DVU2324 DVU2325: merP - mercuric transport protein periplasmic component (TIGR), at 2,422,628 to 2,422,825 merP DVU2326: DVU2326 - conserved domain protein (TIGR), at 2,422,922 to 2,423,824 DVU2326 DORF17147: DORF17147 - SEED: TPR domain protein, at 2,423,824 to 2,424,540 DORF17147 Position (kb) 2422 2423Strain fitness (log2 ratio) -2 -1 0 1 2at 2421.710 kb on + strand, within DVU2324at 2421.740 kb on - strand, within DVU2324at 2421.756 kb on - strand, within DVU2324at 2421.810 kb on + strand, within DVU2324at 2421.822 kb on - strand, within DVU2324at 2421.902 kb on + strand, within DVU2324at 2421.960 kb on + strand, within DVU2324at 2421.963 kb on - strand, within DVU2324at 2421.967 kb on + strand, within DVU2324at 2421.968 kb on - strand, within DVU2324at 2421.968 kb on - strand, within DVU2324at 2422.019 kb on + strand, within DVU2324at 2422.204 kb on + strandat 2422.204 kb on + strandat 2422.204 kb on + strandat 2422.204 kb on + strandat 2422.212 kb on - strandat 2422.254 kb on - strandat 2422.392 kb on + strandat 2422.400 kb on - strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.480 kb on + strandat 2422.483 kb on - strandat 2422.488 kb on - strandat 2422.752 kb on - strand, within merPat 2422.808 kb on + strandat 2422.816 kb on - strandat 2422.914 kb on + strandat 2423.022 kb on - strand, within DVU2326at 2423.045 kb on - strand, within DVU2326at 2423.133 kb on + strand, within DVU2326at 2423.141 kb on - strand, within DVU2326at 2423.141 kb on - strand, within DVU2326at 2423.157 kb on + strand, within DVU2326at 2423.247 kb on + strand, within DVU2326at 2423.334 kb on - strand, within DVU2326at 2423.385 kb on + strand, within DVU2326at 2423.387 kb on + strand, within DVU2326at 2423.388 kb on - strand, within DVU2326at 2423.393 kb on - strand, within DVU2326at 2423.422 kb on + strand, within DVU2326at 2423.435 kb on + strand, within DVU2326at 2423.512 kb on + strand, within DVU2326at 2423.544 kb on - strand, within DVU2326at 2423.569 kb on - strand, within DVU2326at 2423.783 kb on + strandat 2423.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,421,710 + DVU2324 0.76 -0.3
2,421,740 - DVU2324 0.77 -1.3
2,421,756 - DVU2324 0.78 -0.4
2,421,810 + DVU2324 0.80 -1.2
2,421,822 - DVU2324 0.80 +0.3
2,421,902 + DVU2324 0.83 +0.9
2,421,960 + DVU2324 0.85 +0.2
2,421,963 - DVU2324 0.86 -0.4
2,421,967 + DVU2324 0.86 +1.0
2,421,968 - DVU2324 0.86 -0.7
2,421,968 - DVU2324 0.86 +2.0
2,422,019 + DVU2324 0.88 -0.5
2,422,204 + -0.6
2,422,204 + -0.8
2,422,204 + -0.6
2,422,204 + +0.3
2,422,212 - -0.3
2,422,254 - -1.3
2,422,392 + -0.7
2,422,400 - +1.4
2,422,423 + -1.1
2,422,423 + -1.4
2,422,423 + +1.7
2,422,423 + -0.7
2,422,423 + -0.3
2,422,423 + -1.5
2,422,423 + -0.1
2,422,423 + +0.4
2,422,423 + -0.9
2,422,431 - -0.3
2,422,431 - +0.0
2,422,431 - +1.4
2,422,431 - -0.8
2,422,431 - +0.1
2,422,431 - -0.6
2,422,431 - -1.1
2,422,431 - -1.2
2,422,431 - -0.7
2,422,431 - -0.9
2,422,431 - -1.2
2,422,431 - -0.1
2,422,431 - -1.3
2,422,431 - -1.0
2,422,431 - -1.2
2,422,431 - -1.1
2,422,480 + +1.8
2,422,483 - +1.8
2,422,488 - -0.4
2,422,752 - merP DVU2325 0.63 -0.1
2,422,808 + -1.0
2,422,816 - -1.2
2,422,914 + -0.5
2,423,022 - DVU2326 0.11 -1.4
2,423,045 - DVU2326 0.14 -1.9
2,423,133 + DVU2326 0.23 -0.3
2,423,141 - DVU2326 0.24 -0.6
2,423,141 - DVU2326 0.24 -0.6
2,423,157 + DVU2326 0.26 -1.0
2,423,247 + DVU2326 0.36 -0.3
2,423,334 - DVU2326 0.46 -1.2
2,423,385 + DVU2326 0.51 +1.1
2,423,387 + DVU2326 0.51 -0.9
2,423,388 - DVU2326 0.52 -0.9
2,423,393 - DVU2326 0.52 -1.6
2,423,422 + DVU2326 0.55 -0.1
2,423,435 + DVU2326 0.57 -0.4
2,423,512 + DVU2326 0.65 -0.2
2,423,544 - DVU2326 0.69 -1.3
2,423,569 - DVU2326 0.72 -1.1
2,423,783 + +0.7
2,423,791 - +0.7

Or see this region's nucleotide sequence