Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2323

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2322 and DVU2323 are separated by 249 nucleotidesDVU2323 and DVU2324 are separated by 212 nucleotides DVU2322: DVU2322 - UTP--glucose-1-phosphate uridylyltransferase, putative (TIGR), at 2,417,314 to 2,418,753 DVU2322 DVU2323: DVU2323 - hypothetical protein (TIGR), at 2,419,003 to 2,419,425 DVU2323 DVU2324: DVU2324 - copper-translocating P-type ATPase (TIGR), at 2,419,638 to 2,422,355 DVU2324 Position (kb) 2419 2420Strain fitness (log2 ratio) -3 -2 -1 0 1at 2418.086 kb on - strand, within DVU2322at 2418.093 kb on + strand, within DVU2322at 2418.101 kb on - strand, within DVU2322at 2418.106 kb on + strand, within DVU2322at 2418.108 kb on - strand, within DVU2322at 2418.131 kb on + strand, within DVU2322at 2418.171 kb on - strand, within DVU2322at 2418.207 kb on + strand, within DVU2322at 2418.271 kb on - strand, within DVU2322at 2418.461 kb on - strand, within DVU2322at 2418.508 kb on + strand, within DVU2322at 2418.508 kb on + strand, within DVU2322at 2418.516 kb on - strand, within DVU2322at 2418.536 kb on + strand, within DVU2322at 2418.569 kb on + strand, within DVU2322at 2418.700 kb on - strandat 2418.707 kb on - strandat 2418.923 kb on + strandat 2419.061 kb on - strand, within DVU2323at 2419.103 kb on - strand, within DVU2323at 2419.105 kb on + strand, within DVU2323at 2419.250 kb on + strand, within DVU2323at 2419.264 kb on - strand, within DVU2323at 2419.343 kb on - strand, within DVU2323at 2419.512 kb on - strandat 2419.574 kb on + strandat 2419.770 kb on - strandat 2419.821 kb on - strandat 2419.833 kb on + strandat 2419.881 kb on + strandat 2420.062 kb on + strand, within DVU2324at 2420.119 kb on - strand, within DVU2324at 2420.119 kb on - strand, within DVU2324at 2420.147 kb on - strand, within DVU2324at 2420.166 kb on - strand, within DVU2324at 2420.420 kb on - strand, within DVU2324

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,418,086 - DVU2322 0.54 +0.4
2,418,093 + DVU2322 0.54 +0.1
2,418,101 - DVU2322 0.55 +1.2
2,418,106 + DVU2322 0.55 -0.0
2,418,108 - DVU2322 0.55 -0.9
2,418,131 + DVU2322 0.57 -1.3
2,418,171 - DVU2322 0.60 -1.2
2,418,207 + DVU2322 0.62 +0.8
2,418,271 - DVU2322 0.66 -0.5
2,418,461 - DVU2322 0.80 -0.8
2,418,508 + DVU2322 0.83 -1.4
2,418,508 + DVU2322 0.83 +1.7
2,418,516 - DVU2322 0.83 -0.7
2,418,536 + DVU2322 0.85 -1.4
2,418,569 + DVU2322 0.87 -1.8
2,418,700 - -0.8
2,418,707 - +1.0
2,418,923 + -0.6
2,419,061 - DVU2323 0.14 +0.7
2,419,103 - DVU2323 0.24 +1.2
2,419,105 + DVU2323 0.24 -0.2
2,419,250 + DVU2323 0.58 -2.9
2,419,264 - DVU2323 0.62 -2.0
2,419,343 - DVU2323 0.80 -3.2
2,419,512 - -1.9
2,419,574 + -0.9
2,419,770 - -0.4
2,419,821 - -0.8
2,419,833 + +1.6
2,419,881 + -0.4
2,420,062 + DVU2324 0.16 +0.2
2,420,119 - DVU2324 0.18 -0.4
2,420,119 - DVU2324 0.18 -0.5
2,420,147 - DVU2324 0.19 -0.9
2,420,166 - DVU2324 0.19 -0.1
2,420,420 - DVU2324 0.29 +0.5

Or see this region's nucleotide sequence