Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimM and DVU0838 are separated by 23 nucleotides DVU0838 and rpsP are separated by 83 nucleotides rpsP and ffh are separated by 78 nucleotides ffh and DVU0841 are separated by 228 nucleotides
DVU0837: rimM - 16S rRNA processing protein RimM (TIGR), at 926,250 to 926,780
rimM
DVU0838: DVU0838 - conserved hypothetical protein (TIGR), at 926,804 to 927,037
DVU0838
DVU0839: rpsP - ribosomal protein S16 (TIGR), at 927,121 to 927,360
rpsP
DVU0840: ffh - signal recognition particle protein (TIGR), at 927,439 to 928,965
ffh
DVU0841: DVU0841 - aspartate aminotransferase, putative (TIGR), at 929,194 to 930,375
DVU0841
Position (kb) 927
928
929 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 929.020 kb on + strand at 929.056 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.157 kb on - strand at 929.157 kb on - strand at 929.157 kb on - strand at 929.174 kb on + strand at 929.211 kb on - strand at 929.260 kb on - strand at 929.271 kb on + strand at 929.271 kb on + strand at 929.294 kb on - strand at 929.424 kb on - strand, within DVU0841 at 929.436 kb on + strand, within DVU0841 at 929.497 kb on + strand, within DVU0841 at 929.660 kb on - strand, within DVU0841 at 929.691 kb on + strand, within DVU0841 at 929.760 kb on - strand, within DVU0841 at 929.762 kb on + strand, within DVU0841 at 929.791 kb on + strand, within DVU0841 at 929.875 kb on + strand, within DVU0841 at 929.917 kb on - strand, within DVU0841 at 929.930 kb on + strand, within DVU0841
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 929,020 + -0.6 929,056 + +0.6 929,149 + +2.2 929,149 + +1.7 929,157 - -0.5 929,157 - -0.5 929,157 - -0.5 929,174 + +0.0 929,211 - -2.3 929,260 - -3.2 929,271 + +0.5 929,271 + -3.0 929,294 - +1.0 929,424 - DVU0841 0.19 -1.9 929,436 + DVU0841 0.20 -3.1 929,497 + DVU0841 0.26 +1.0 929,660 - DVU0841 0.39 -3.9 929,691 + DVU0841 0.42 +0.4 929,760 - DVU0841 0.48 -0.9 929,762 + DVU0841 0.48 -0.9 929,791 + DVU0841 0.51 -2.5 929,875 + DVU0841 0.58 -3.4 929,917 - DVU0841 0.61 -5.6 929,930 + DVU0841 0.62 -3.5
Or see this region's nucleotide sequence