Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cheV-2 and atoC are separated by 610 nucleotides atoC and DVU0654 are separated by 20 nucleotides
DVU0652: cheV-2 - chemotaxis protein CheV (TIGR), at 723,349 to 724,299
cheV-2
DVU0653: atoC - sigma-54 dependent transcriptional regulator, putative/response regulator (TIGR), at 724,910 to 726,595
atoC
DVU0654: DVU0654 - peptidase, U32 family (TIGR), at 726,616 to 727,842
DVU0654
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 723.995 kb on + strand, within cheV-2 at 724.003 kb on - strand, within cheV-2 at 724.106 kb on + strand, within cheV-2 at 724.106 kb on + strand, within cheV-2 at 724.106 kb on + strand, within cheV-2 at 724.114 kb on - strand, within cheV-2 at 724.163 kb on - strand, within cheV-2 at 724.165 kb on - strand, within cheV-2 at 724.198 kb on + strand, within cheV-2 at 724.310 kb on + strand at 724.374 kb on - strand at 724.382 kb on - strand at 724.467 kb on - strand at 724.709 kb on + strand at 724.790 kb on + strand at 725.046 kb on + strand at 725.050 kb on + strand at 725.058 kb on - strand at 725.058 kb on - strand at 725.058 kb on - strand at 725.098 kb on - strand, within atoC at 725.271 kb on + strand, within atoC at 725.279 kb on - strand, within atoC at 725.279 kb on - strand, within atoC at 725.279 kb on - strand, within atoC at 725.292 kb on + strand, within atoC at 725.292 kb on - strand, within atoC at 725.345 kb on + strand, within atoC at 725.353 kb on - strand, within atoC at 725.372 kb on - strand, within atoC at 725.518 kb on + strand, within atoC at 725.574 kb on + strand, within atoC at 725.647 kb on - strand, within atoC at 725.765 kb on - strand, within atoC at 725.826 kb on + strand, within atoC at 725.826 kb on + strand, within atoC at 725.834 kb on - strand, within atoC at 725.834 kb on - strand, within atoC at 725.834 kb on - strand, within atoC at 725.970 kb on + strand, within atoC at 726.002 kb on - strand, within atoC at 726.043 kb on - strand, within atoC at 726.108 kb on - strand, within atoC at 726.271 kb on + strand, within atoC at 726.271 kb on + strand, within atoC at 726.279 kb on - strand, within atoC at 726.279 kb on - strand, within atoC at 726.281 kb on + strand, within atoC at 726.281 kb on + strand, within atoC at 726.382 kb on - strand, within atoC at 726.486 kb on + strand at 726.528 kb on - strand at 726.685 kb on + strand at 726.715 kb on + strand at 726.753 kb on + strand, within DVU0654 at 726.763 kb on + strand, within DVU0654 at 726.816 kb on - strand, within DVU0654 at 726.930 kb on - strand, within DVU0654 at 727.038 kb on + strand, within DVU0654 at 727.132 kb on - strand, within DVU0654 at 727.153 kb on + strand, within DVU0654 at 727.179 kb on + strand, within DVU0654 at 727.273 kb on - strand, within DVU0654 at 727.293 kb on + strand, within DVU0654 at 727.399 kb on + strand, within DVU0654 at 727.440 kb on - strand, within DVU0654 at 727.486 kb on - strand, within DVU0654 at 727.491 kb on - strand, within DVU0654 at 727.536 kb on - strand, within DVU0654 at 727.553 kb on + strand, within DVU0654
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 723,995 + cheV-2 DVU0652 0.68 -1.6 724,003 - cheV-2 DVU0652 0.69 -0.8 724,106 + cheV-2 DVU0652 0.80 -1.2 724,106 + cheV-2 DVU0652 0.80 -0.5 724,106 + cheV-2 DVU0652 0.80 +0.5 724,114 - cheV-2 DVU0652 0.80 -1.1 724,163 - cheV-2 DVU0652 0.86 -0.3 724,165 - cheV-2 DVU0652 0.86 +0.3 724,198 + cheV-2 DVU0652 0.89 -0.5 724,310 + -1.0 724,374 - -0.9 724,382 - +0.4 724,467 - -0.8 724,709 + -1.8 724,790 + -1.8 725,046 + -0.7 725,050 + -0.8 725,058 - +0.8 725,058 - +2.8 725,058 - +0.3 725,098 - atoC DVU0653 0.11 -2.0 725,271 + atoC DVU0653 0.21 -0.7 725,279 - atoC DVU0653 0.22 +0.0 725,279 - atoC DVU0653 0.22 +1.2 725,279 - atoC DVU0653 0.22 -1.0 725,292 + atoC DVU0653 0.23 -0.5 725,292 - atoC DVU0653 0.23 -0.6 725,345 + atoC DVU0653 0.26 +0.8 725,353 - atoC DVU0653 0.26 -0.9 725,372 - atoC DVU0653 0.27 +0.8 725,518 + atoC DVU0653 0.36 +0.1 725,574 + atoC DVU0653 0.39 -1.1 725,647 - atoC DVU0653 0.44 -1.4 725,765 - atoC DVU0653 0.51 -0.9 725,826 + atoC DVU0653 0.54 +0.5 725,826 + atoC DVU0653 0.54 -0.5 725,834 - atoC DVU0653 0.55 +0.5 725,834 - atoC DVU0653 0.55 -1.6 725,834 - atoC DVU0653 0.55 -0.3 725,970 + atoC DVU0653 0.63 -0.3 726,002 - atoC DVU0653 0.65 -0.9 726,043 - atoC DVU0653 0.67 -0.9 726,108 - atoC DVU0653 0.71 -1.3 726,271 + atoC DVU0653 0.81 +2.4 726,271 + atoC DVU0653 0.81 +0.6 726,279 - atoC DVU0653 0.81 +0.8 726,279 - atoC DVU0653 0.81 -0.6 726,281 + atoC DVU0653 0.81 -0.6 726,281 + atoC DVU0653 0.81 +1.8 726,382 - atoC DVU0653 0.87 -0.9 726,486 + +1.6 726,528 - +0.9 726,685 + -2.6 726,715 + -0.8 726,753 + DVU0654 0.11 -2.2 726,763 + DVU0654 0.12 +2.2 726,816 - DVU0654 0.16 -0.9 726,930 - DVU0654 0.26 +1.4 727,038 + DVU0654 0.34 +1.0 727,132 - DVU0654 0.42 +1.0 727,153 + DVU0654 0.44 -0.8 727,179 + DVU0654 0.46 -1.2 727,273 - DVU0654 0.54 -0.5 727,293 + DVU0654 0.55 -0.1 727,399 + DVU0654 0.64 -0.3 727,440 - DVU0654 0.67 +1.6 727,486 - DVU0654 0.71 -0.8 727,491 - DVU0654 0.71 -0.7 727,536 - DVU0654 0.75 +1.6 727,553 + DVU0654 0.76 +2.0
Or see this region's nucleotide sequence