Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF765

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchrB and DORF765 overlap by 14 nucleotidesDORF765 and DORF768 are separated by 63 nucleotidesDORF768 and DVUA0096 are separated by 332 nucleotides DVUA0094: chrB - chrB protein (TIGR), at 127,186 to 128,190 chrB DORF765: DORF765 - SEED: Rhodanese-like protein ChrE, at 128,177 to 128,488 DORF765 DORF768: DORF768 - no description, at 128,552 to 128,830 DORF768 DVUA0096: DVUA0096 - major facilitator superfamily protein (TIGR), at 129,163 to 130,374 DVUA0096 Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 127.183 kb on + strandat 127.196 kb on - strandat 127.221 kb on + strandat 127.352 kb on - strand, within chrBat 127.376 kb on + strand, within chrBat 127.400 kb on - strand, within chrBat 127.453 kb on + strand, within chrBat 127.476 kb on + strand, within chrBat 127.580 kb on - strand, within chrBat 127.649 kb on + strand, within chrBat 127.693 kb on + strand, within chrBat 127.743 kb on - strand, within chrBat 127.757 kb on + strand, within chrBat 127.767 kb on + strand, within chrBat 127.898 kb on + strand, within chrBat 127.947 kb on - strand, within chrBat 127.963 kb on + strand, within chrBat 127.980 kb on + strand, within chrBat 128.027 kb on + strand, within chrBat 128.035 kb on - strand, within chrBat 128.172 kb on - strandat 128.174 kb on + strandat 128.182 kb on - strandat 128.182 kb on - strandat 128.235 kb on + strand, within DORF765at 128.295 kb on + strand, within DORF765at 128.305 kb on - strand, within DORF765at 128.335 kb on - strand, within DORF765at 128.340 kb on + strand, within DORF765at 128.395 kb on - strand, within DORF765at 128.469 kb on + strandat 128.489 kb on + strandat 128.502 kb on + strandat 128.557 kb on - strandat 128.616 kb on + strand, within DORF768at 128.728 kb on - strand, within DORF768at 128.759 kb on + strand, within DORF768at 128.766 kb on + strand, within DORF768at 128.821 kb on + strandat 128.855 kb on + strandat 128.934 kb on - strandat 128.976 kb on - strandat 129.092 kb on + strandat 129.186 kb on + strandat 129.218 kb on + strandat 129.232 kb on - strandat 129.234 kb on + strandat 129.236 kb on + strandat 129.241 kb on + strandat 129.244 kb on - strandat 129.423 kb on - strand, within DVUA0096at 129.454 kb on + strand, within DVUA0096

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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127,183 + -0.8
127,196 - +2.6
127,221 + -0.8
127,352 - chrB DVUA0094 0.17 +0.4
127,376 + chrB DVUA0094 0.19 -1.6
127,400 - chrB DVUA0094 0.21 -1.5
127,453 + chrB DVUA0094 0.27 +1.3
127,476 + chrB DVUA0094 0.29 -0.5
127,580 - chrB DVUA0094 0.39 -2.0
127,649 + chrB DVUA0094 0.46 -0.5
127,693 + chrB DVUA0094 0.50 -1.5
127,743 - chrB DVUA0094 0.55 +1.5
127,757 + chrB DVUA0094 0.57 -1.2
127,767 + chrB DVUA0094 0.58 -1.7
127,898 + chrB DVUA0094 0.71 +0.9
127,947 - chrB DVUA0094 0.76 -0.8
127,963 + chrB DVUA0094 0.77 -0.9
127,980 + chrB DVUA0094 0.79 +0.9
128,027 + chrB DVUA0094 0.84 -0.8
128,035 - chrB DVUA0094 0.84 -0.5
128,172 - -0.6
128,174 + +0.4
128,182 - -1.7
128,182 - -1.4
128,235 + DORF765 0.19 +0.5
128,295 + DORF765 0.38 -1.5
128,305 - DORF765 0.41 +1.6
128,335 - DORF765 0.51 +1.8
128,340 + DORF765 0.52 -1.1
128,395 - DORF765 0.70 +1.0
128,469 + -0.2
128,489 + -0.5
128,502 + +1.3
128,557 - +0.5
128,616 + DORF768 0.23 -1.0
128,728 - DORF768 0.63 -0.5
128,759 + DORF768 0.74 -2.5
128,766 + DORF768 0.77 -1.8
128,821 + +2.6
128,855 + +1.6
128,934 - +0.4
128,976 - +0.2
129,092 + -0.9
129,186 + -1.0
129,218 + +3.1
129,232 - +0.8
129,234 + -0.3
129,236 + -0.6
129,241 + -0.4
129,244 - -0.7
129,423 - DVUA0096 0.21 -1.4
129,454 + DVUA0096 0.24 +0.1

Or see this region's nucleotide sequence