Experiment: No grazer plate rep 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cynS and cynD are separated by 10 nucleotides cynD and cynB are separated by 3 nucleotides cynB and cynA are separated by 9 nucleotides
Synpcc7942_2104: cynS - cyanate hydratase, at 2,184,740 to 2,185,180
cynS
Synpcc7942_2105: cynD - nitrate transport ATP-binding subunits C and D, at 2,185,191 to 2,186,060
cynD
Synpcc7942_2106: cynB - nitrate transport permease, at 2,186,064 to 2,186,855
cynB
Synpcc7942_2107: cynA - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like, at 2,186,865 to 2,188,454
cynA
Position (kb)
2186
2187 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2185.188 kb on + strand at 2185.190 kb on + strand at 2185.298 kb on - strand, within cynD at 2185.312 kb on + strand, within cynD at 2185.361 kb on + strand, within cynD at 2185.385 kb on + strand, within cynD at 2185.388 kb on - strand, within cynD at 2185.399 kb on - strand, within cynD at 2185.420 kb on - strand, within cynD at 2185.468 kb on + strand, within cynD at 2185.473 kb on + strand, within cynD at 2185.491 kb on + strand, within cynD at 2185.525 kb on - strand, within cynD at 2185.535 kb on + strand, within cynD at 2185.535 kb on + strand, within cynD at 2185.535 kb on + strand, within cynD at 2185.543 kb on - strand, within cynD at 2185.543 kb on - strand, within cynD at 2185.559 kb on + strand, within cynD at 2185.567 kb on - strand at 2185.569 kb on - strand, within cynD at 2185.608 kb on - strand, within cynD at 2185.614 kb on - strand, within cynD at 2185.619 kb on + strand, within cynD at 2185.620 kb on + strand, within cynD at 2185.627 kb on - strand, within cynD at 2185.664 kb on + strand, within cynD at 2185.664 kb on + strand, within cynD at 2185.672 kb on - strand, within cynD at 2185.672 kb on - strand, within cynD at 2185.672 kb on - strand, within cynD at 2185.672 kb on - strand, within cynD at 2185.735 kb on - strand, within cynD at 2185.761 kb on - strand, within cynD at 2185.776 kb on + strand, within cynD at 2185.842 kb on + strand, within cynD at 2186.024 kb on - strand at 2186.116 kb on - strand at 2186.220 kb on + strand, within cynB at 2186.231 kb on + strand, within cynB at 2186.236 kb on + strand, within cynB at 2186.247 kb on - strand, within cynB at 2186.249 kb on + strand, within cynB at 2186.257 kb on - strand, within cynB at 2186.292 kb on + strand, within cynB at 2186.292 kb on + strand, within cynB at 2186.300 kb on - strand, within cynB at 2186.374 kb on + strand, within cynB at 2186.390 kb on + strand, within cynB at 2186.399 kb on - strand, within cynB at 2186.404 kb on - strand, within cynB at 2186.406 kb on + strand, within cynB at 2186.409 kb on - strand, within cynB at 2186.511 kb on - strand, within cynB at 2186.512 kb on + strand, within cynB at 2186.614 kb on - strand, within cynB at 2186.640 kb on - strand, within cynB at 2186.843 kb on - strand at 2186.845 kb on - strand at 2186.926 kb on - strand at 2186.985 kb on - strand at 2187.057 kb on - strand, within cynA at 2187.057 kb on - strand, within cynA at 2187.067 kb on + strand, within cynA at 2187.087 kb on + strand, within cynA at 2187.128 kb on - strand, within cynA at 2187.172 kb on - strand, within cynA at 2187.635 kb on - strand, within cynA at 2187.732 kb on + strand, within cynA at 2187.740 kb on - strand, within cynA at 2187.740 kb on - strand, within cynA at 2187.749 kb on + strand, within cynA at 2187.752 kb on - strand, within cynA
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 2 remove 2,185,188 + -1.6 2,185,190 + -0.6 2,185,298 - cynD Synpcc7942_2105 0.12 -0.8 2,185,312 + cynD Synpcc7942_2105 0.14 +0.9 2,185,361 + cynD Synpcc7942_2105 0.20 -0.1 2,185,385 + cynD Synpcc7942_2105 0.22 -0.0 2,185,388 - cynD Synpcc7942_2105 0.23 -1.3 2,185,399 - cynD Synpcc7942_2105 0.24 +0.6 2,185,420 - cynD Synpcc7942_2105 0.26 -0.0 2,185,468 + cynD Synpcc7942_2105 0.32 +0.3 2,185,473 + cynD Synpcc7942_2105 0.32 -0.9 2,185,491 + cynD Synpcc7942_2105 0.34 +3.5 2,185,525 - cynD Synpcc7942_2105 0.38 +0.5 2,185,535 + cynD Synpcc7942_2105 0.40 +0.1 2,185,535 + cynD Synpcc7942_2105 0.40 -1.7 2,185,535 + cynD Synpcc7942_2105 0.40 -0.0 2,185,543 - cynD Synpcc7942_2105 0.40 -0.4 2,185,543 - cynD Synpcc7942_2105 0.40 -0.0 2,185,559 + cynD Synpcc7942_2105 0.42 -1.0 2,185,567 - +0.1 2,185,569 - cynD Synpcc7942_2105 0.43 -0.6 2,185,608 - cynD Synpcc7942_2105 0.48 -1.7 2,185,614 - cynD Synpcc7942_2105 0.49 -1.8 2,185,619 + cynD Synpcc7942_2105 0.49 -0.6 2,185,620 + cynD Synpcc7942_2105 0.49 +0.3 2,185,627 - cynD Synpcc7942_2105 0.50 -1.0 2,185,664 + cynD Synpcc7942_2105 0.54 +0.1 2,185,664 + cynD Synpcc7942_2105 0.54 +0.8 2,185,672 - cynD Synpcc7942_2105 0.55 -0.0 2,185,672 - cynD Synpcc7942_2105 0.55 -1.7 2,185,672 - cynD Synpcc7942_2105 0.55 -1.0 2,185,672 - cynD Synpcc7942_2105 0.55 -0.4 2,185,735 - cynD Synpcc7942_2105 0.63 -0.7 2,185,761 - cynD Synpcc7942_2105 0.66 +0.3 2,185,776 + cynD Synpcc7942_2105 0.67 +4.8 2,185,842 + cynD Synpcc7942_2105 0.75 -0.0 2,186,024 - -2.4 2,186,116 - +0.1 2,186,220 + cynB Synpcc7942_2106 0.20 +1.0 2,186,231 + cynB Synpcc7942_2106 0.21 -0.2 2,186,236 + cynB Synpcc7942_2106 0.22 +0.3 2,186,247 - cynB Synpcc7942_2106 0.23 -0.5 2,186,249 + cynB Synpcc7942_2106 0.23 +0.9 2,186,257 - cynB Synpcc7942_2106 0.24 +0.4 2,186,292 + cynB Synpcc7942_2106 0.29 -0.6 2,186,292 + cynB Synpcc7942_2106 0.29 -0.8 2,186,300 - cynB Synpcc7942_2106 0.30 +0.5 2,186,374 + cynB Synpcc7942_2106 0.39 -1.0 2,186,390 + cynB Synpcc7942_2106 0.41 +0.2 2,186,399 - cynB Synpcc7942_2106 0.42 +0.2 2,186,404 - cynB Synpcc7942_2106 0.43 -0.6 2,186,406 + cynB Synpcc7942_2106 0.43 -0.8 2,186,409 - cynB Synpcc7942_2106 0.44 -1.2 2,186,511 - cynB Synpcc7942_2106 0.56 +0.2 2,186,512 + cynB Synpcc7942_2106 0.57 +0.7 2,186,614 - cynB Synpcc7942_2106 0.69 +0.8 2,186,640 - cynB Synpcc7942_2106 0.73 +0.5 2,186,843 - -0.5 2,186,845 - -0.3 2,186,926 - -1.9 2,186,985 - +0.9 2,187,057 - cynA Synpcc7942_2107 0.12 -2.4 2,187,057 - cynA Synpcc7942_2107 0.12 -1.0 2,187,067 + cynA Synpcc7942_2107 0.13 -1.7 2,187,087 + cynA Synpcc7942_2107 0.14 -2.0 2,187,128 - cynA Synpcc7942_2107 0.17 +0.7 2,187,172 - cynA Synpcc7942_2107 0.19 -1.3 2,187,635 - cynA Synpcc7942_2107 0.48 -2.0 2,187,732 + cynA Synpcc7942_2107 0.55 -0.9 2,187,740 - cynA Synpcc7942_2107 0.55 -1.7 2,187,740 - cynA Synpcc7942_2107 0.55 -0.7 2,187,749 + cynA Synpcc7942_2107 0.56 -1.1 2,187,752 - cynA Synpcc7942_2107 0.56 -0.4
Or see this region's nucleotide sequence