Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0955

Experiment: No grazer plate rep 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0954 and Synpcc7942_0955 overlap by 29 nucleotidesSynpcc7942_0955 and Synpcc7942_0956 are separated by 135 nucleotides Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300 _0954 Synpcc7942_0955: Synpcc7942_0955 - hypothetical protein, at 963,272 to 963,790 _0955 Synpcc7942_0956: Synpcc7942_0956 - hypothetical protein, at 963,926 to 965,068 _0956 Position (kb) 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 962.285 kb on - strandat 962.316 kb on - strandat 962.319 kb on - strandat 962.353 kb on + strandat 962.353 kb on + strandat 962.361 kb on - strandat 962.386 kb on - strand, within Synpcc7942_0954at 962.386 kb on - strand, within Synpcc7942_0954at 962.434 kb on + strand, within Synpcc7942_0954at 962.434 kb on + strand, within Synpcc7942_0954at 962.442 kb on - strand, within Synpcc7942_0954at 962.442 kb on - strand, within Synpcc7942_0954at 962.468 kb on - strand, within Synpcc7942_0954at 962.500 kb on - strand, within Synpcc7942_0954at 962.503 kb on + strand, within Synpcc7942_0954at 962.510 kb on + strand, within Synpcc7942_0954at 962.510 kb on + strand, within Synpcc7942_0954at 962.524 kb on + strand, within Synpcc7942_0954at 962.531 kb on - strand, within Synpcc7942_0954at 962.539 kb on - strand, within Synpcc7942_0954at 962.548 kb on - strand, within Synpcc7942_0954at 962.548 kb on - strand, within Synpcc7942_0954at 962.572 kb on + strand, within Synpcc7942_0954at 962.590 kb on + strand, within Synpcc7942_0954at 962.598 kb on - strand, within Synpcc7942_0954at 962.599 kb on - strand, within Synpcc7942_0954at 962.624 kb on + strand, within Synpcc7942_0954at 962.631 kb on - strand, within Synpcc7942_0954at 962.656 kb on + strand, within Synpcc7942_0954at 962.670 kb on - strand, within Synpcc7942_0954at 962.689 kb on - strand, within Synpcc7942_0954at 962.699 kb on - strand, within Synpcc7942_0954at 962.741 kb on + strand, within Synpcc7942_0954at 962.741 kb on + strand, within Synpcc7942_0954at 962.749 kb on - strand, within Synpcc7942_0954at 962.749 kb on - strand, within Synpcc7942_0954at 962.749 kb on - strand, within Synpcc7942_0954at 962.755 kb on - strand, within Synpcc7942_0954at 962.759 kb on + strand, within Synpcc7942_0954at 962.766 kb on + strand, within Synpcc7942_0954at 962.792 kb on + strand, within Synpcc7942_0954at 962.793 kb on - strand, within Synpcc7942_0954at 962.798 kb on - strand, within Synpcc7942_0954at 962.799 kb on + strand, within Synpcc7942_0954at 962.799 kb on + strand, within Synpcc7942_0954at 962.807 kb on - strand, within Synpcc7942_0954at 962.814 kb on - strand, within Synpcc7942_0954at 962.825 kb on + strand, within Synpcc7942_0954at 962.864 kb on + strand, within Synpcc7942_0954at 962.928 kb on + strand, within Synpcc7942_0954at 962.928 kb on + strand, within Synpcc7942_0954at 962.928 kb on - strand, within Synpcc7942_0954at 962.928 kb on - strand, within Synpcc7942_0954at 962.964 kb on + strand, within Synpcc7942_0954at 962.969 kb on + strand, within Synpcc7942_0954at 963.006 kb on - strand, within Synpcc7942_0954at 963.028 kb on - strand, within Synpcc7942_0954at 963.031 kb on + strand, within Synpcc7942_0954at 963.041 kb on - strand, within Synpcc7942_0954at 963.041 kb on - strand, within Synpcc7942_0954at 963.049 kb on - strand, within Synpcc7942_0954at 963.049 kb on - strand, within Synpcc7942_0954at 963.094 kb on + strand, within Synpcc7942_0954at 963.097 kb on - strand, within Synpcc7942_0954at 963.112 kb on + strand, within Synpcc7942_0954at 963.147 kb on - strand, within Synpcc7942_0954at 963.154 kb on - strand, within Synpcc7942_0954at 963.157 kb on - strand, within Synpcc7942_0954at 963.159 kb on + strand, within Synpcc7942_0954at 963.192 kb on + strand, within Synpcc7942_0954at 963.200 kb on + strandat 963.208 kb on - strandat 963.220 kb on - strandat 963.249 kb on + strandat 963.249 kb on + strandat 963.250 kb on - strandat 963.257 kb on - strandat 963.262 kb on - strandat 963.314 kb on - strandat 963.331 kb on - strand, within Synpcc7942_0955at 963.379 kb on + strand, within Synpcc7942_0955at 963.397 kb on - strand, within Synpcc7942_0955at 963.449 kb on - strand, within Synpcc7942_0955at 963.449 kb on - strandat 963.449 kb on - strand, within Synpcc7942_0955at 963.449 kb on - strand, within Synpcc7942_0955at 963.454 kb on - strand, within Synpcc7942_0955at 963.480 kb on - strand, within Synpcc7942_0955at 963.494 kb on + strand, within Synpcc7942_0955at 963.497 kb on + strand, within Synpcc7942_0955at 963.499 kb on + strand, within Synpcc7942_0955at 963.499 kb on + strand, within Synpcc7942_0955at 963.499 kb on + strand, within Synpcc7942_0955at 963.502 kb on - strand, within Synpcc7942_0955at 963.506 kb on - strand, within Synpcc7942_0955at 963.507 kb on - strand, within Synpcc7942_0955at 963.507 kb on - strand, within Synpcc7942_0955at 963.508 kb on + strand, within Synpcc7942_0955at 963.513 kb on + strand, within Synpcc7942_0955at 963.513 kb on + strand, within Synpcc7942_0955at 963.513 kb on + strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.521 kb on - strand, within Synpcc7942_0955at 963.523 kb on + strandat 963.523 kb on + strand, within Synpcc7942_0955at 963.554 kb on + strand, within Synpcc7942_0955at 963.598 kb on + strand, within Synpcc7942_0955at 963.599 kb on + strand, within Synpcc7942_0955at 963.599 kb on + strand, within Synpcc7942_0955at 963.606 kb on - strand, within Synpcc7942_0955at 963.640 kb on + strand, within Synpcc7942_0955at 963.647 kb on + strand, within Synpcc7942_0955at 963.648 kb on - strand, within Synpcc7942_0955at 963.674 kb on - strand, within Synpcc7942_0955at 963.676 kb on + strand, within Synpcc7942_0955at 963.769 kb on - strandat 963.801 kb on - strandat 963.801 kb on - strandat 963.823 kb on + strandat 963.824 kb on - strandat 963.863 kb on + strandat 963.863 kb on + strandat 963.863 kb on + strandat 963.863 kb on + strandat 963.863 kb on + strandat 963.864 kb on + strandat 963.865 kb on + strandat 963.866 kb on - strandat 963.871 kb on - strandat 963.871 kb on - strandat 963.871 kb on - strandat 963.871 kb on - strandat 963.871 kb on - strandat 963.871 kb on - strandat 963.871 kb on - strandat 963.878 kb on + strandat 963.878 kb on + strandat 963.886 kb on - strandat 963.886 kb on - strandat 963.886 kb on - strandat 963.887 kb on - strandat 963.897 kb on - strandat 964.014 kb on + strandat 964.023 kb on - strandat 964.043 kb on - strand, within Synpcc7942_0956at 964.043 kb on - strand, within Synpcc7942_0956at 964.068 kb on - strand, within Synpcc7942_0956at 964.068 kb on - strand, within Synpcc7942_0956at 964.138 kb on - strand, within Synpcc7942_0956at 964.150 kb on - strand, within Synpcc7942_0956at 964.158 kb on - strand, within Synpcc7942_0956at 964.172 kb on + strand, within Synpcc7942_0956at 964.256 kb on + strand, within Synpcc7942_0956at 964.280 kb on + strand, within Synpcc7942_0956at 964.304 kb on - strand, within Synpcc7942_0956at 964.310 kb on + strand, within Synpcc7942_0956at 964.354 kb on + strand, within Synpcc7942_0956at 964.357 kb on + strand, within Synpcc7942_0956at 964.362 kb on - strand, within Synpcc7942_0956at 964.402 kb on + strand, within Synpcc7942_0956at 964.426 kb on + strand, within Synpcc7942_0956at 964.439 kb on - strand, within Synpcc7942_0956at 964.532 kb on - strand, within Synpcc7942_0956at 964.595 kb on - strand, within Synpcc7942_0956at 964.670 kb on + strand, within Synpcc7942_0956at 964.758 kb on + strand, within Synpcc7942_0956at 964.766 kb on - strand, within Synpcc7942_0956

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Per-strain Table

Position Strand Gene LocusTag Fraction No grazer plate rep 2
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962,285 - +0.4
962,316 - +1.3
962,319 - +0.1
962,353 + +0.1
962,353 + -0.5
962,361 - -0.2
962,386 - Synpcc7942_0954 0.12 -0.8
962,386 - Synpcc7942_0954 0.12 +0.2
962,434 + Synpcc7942_0954 0.16 -1.1
962,434 + Synpcc7942_0954 0.16 +0.6
962,442 - Synpcc7942_0954 0.17 +0.4
962,442 - Synpcc7942_0954 0.17 -0.9
962,468 - Synpcc7942_0954 0.20 +0.0
962,500 - Synpcc7942_0954 0.23 +0.5
962,503 + Synpcc7942_0954 0.23 +0.4
962,510 + Synpcc7942_0954 0.24 +1.5
962,510 + Synpcc7942_0954 0.24 -1.7
962,524 + Synpcc7942_0954 0.25 -0.4
962,531 - Synpcc7942_0954 0.26 -0.1
962,539 - Synpcc7942_0954 0.26 +1.2
962,548 - Synpcc7942_0954 0.27 -0.2
962,548 - Synpcc7942_0954 0.27 +1.0
962,572 + Synpcc7942_0954 0.30 -2.3
962,590 + Synpcc7942_0954 0.31 -0.2
962,598 - Synpcc7942_0954 0.32 -0.8
962,599 - Synpcc7942_0954 0.32 -0.3
962,624 + Synpcc7942_0954 0.35 -1.1
962,631 - Synpcc7942_0954 0.35 -1.0
962,656 + Synpcc7942_0954 0.38 -3.2
962,670 - Synpcc7942_0954 0.39 +0.1
962,689 - Synpcc7942_0954 0.41 -0.1
962,699 - Synpcc7942_0954 0.42 -1.1
962,741 + Synpcc7942_0954 0.46 +1.4
962,741 + Synpcc7942_0954 0.46 -2.0
962,749 - Synpcc7942_0954 0.47 -2.0
962,749 - Synpcc7942_0954 0.47 +0.1
962,749 - Synpcc7942_0954 0.47 -1.2
962,755 - Synpcc7942_0954 0.47 +2.1
962,759 + Synpcc7942_0954 0.48 -0.6
962,766 + Synpcc7942_0954 0.48 -0.4
962,792 + Synpcc7942_0954 0.51 +1.8
962,793 - Synpcc7942_0954 0.51 -1.6
962,798 - Synpcc7942_0954 0.51 -0.2
962,799 + Synpcc7942_0954 0.51 +0.2
962,799 + Synpcc7942_0954 0.51 +0.2
962,807 - Synpcc7942_0954 0.52 +0.1
962,814 - Synpcc7942_0954 0.53 -1.6
962,825 + Synpcc7942_0954 0.54 -0.5
962,864 + Synpcc7942_0954 0.58 -0.9
962,928 + Synpcc7942_0954 0.64 -0.6
962,928 + Synpcc7942_0954 0.64 -0.3
962,928 - Synpcc7942_0954 0.64 +0.4
962,928 - Synpcc7942_0954 0.64 -0.0
962,964 + Synpcc7942_0954 0.67 -1.5
962,969 + Synpcc7942_0954 0.68 +2.0
963,006 - Synpcc7942_0954 0.71 -0.1
963,028 - Synpcc7942_0954 0.74 -1.4
963,031 + Synpcc7942_0954 0.74 -1.8
963,041 - Synpcc7942_0954 0.75 +0.1
963,041 - Synpcc7942_0954 0.75 -0.6
963,049 - Synpcc7942_0954 0.76 +0.5
963,049 - Synpcc7942_0954 0.76 +2.6
963,094 + Synpcc7942_0954 0.80 +0.3
963,097 - Synpcc7942_0954 0.80 +0.6
963,112 + Synpcc7942_0954 0.82 -2.2
963,147 - Synpcc7942_0954 0.85 +0.2
963,154 - Synpcc7942_0954 0.86 -0.4
963,157 - Synpcc7942_0954 0.86 -1.3
963,159 + Synpcc7942_0954 0.86 -0.6
963,192 + Synpcc7942_0954 0.89 +1.7
963,200 + -2.3
963,208 - +0.8
963,220 - -0.4
963,249 + +0.5
963,249 + -1.2
963,250 - +0.2
963,257 - -0.3
963,262 - -0.4
963,314 - +2.1
963,331 - Synpcc7942_0955 0.11 -1.9
963,379 + Synpcc7942_0955 0.21 +0.7
963,397 - Synpcc7942_0955 0.24 -2.1
963,449 - Synpcc7942_0955 0.34 +0.7
963,449 - +0.2
963,449 - Synpcc7942_0955 0.34 +0.7
963,449 - Synpcc7942_0955 0.34 -1.8
963,454 - Synpcc7942_0955 0.35 -1.0
963,480 - Synpcc7942_0955 0.40 -1.6
963,494 + Synpcc7942_0955 0.43 -1.5
963,497 + Synpcc7942_0955 0.43 -1.7
963,499 + Synpcc7942_0955 0.44 -0.8
963,499 + Synpcc7942_0955 0.44 +0.2
963,499 + Synpcc7942_0955 0.44 +0.9
963,502 - Synpcc7942_0955 0.44 -1.9
963,506 - Synpcc7942_0955 0.45 +0.1
963,507 - Synpcc7942_0955 0.45 -1.3
963,507 - Synpcc7942_0955 0.45 -0.5
963,508 + Synpcc7942_0955 0.45 -0.2
963,513 + Synpcc7942_0955 0.46 -2.5
963,513 + Synpcc7942_0955 0.46 -0.4
963,513 + Synpcc7942_0955 0.46 +0.1
963,521 - Synpcc7942_0955 0.48 +0.5
963,521 - Synpcc7942_0955 0.48 -0.4
963,521 - Synpcc7942_0955 0.48 +0.4
963,521 - Synpcc7942_0955 0.48 -0.3
963,521 - Synpcc7942_0955 0.48 -0.1
963,521 - Synpcc7942_0955 0.48 -0.9
963,521 - Synpcc7942_0955 0.48 -1.0
963,521 - Synpcc7942_0955 0.48 +0.5
963,521 - Synpcc7942_0955 0.48 +0.1
963,523 + +1.2
963,523 + Synpcc7942_0955 0.48 -0.5
963,554 + Synpcc7942_0955 0.54 +0.5
963,598 + Synpcc7942_0955 0.63 -1.0
963,599 + Synpcc7942_0955 0.63 -2.3
963,599 + Synpcc7942_0955 0.63 -0.5
963,606 - Synpcc7942_0955 0.64 -1.3
963,640 + Synpcc7942_0955 0.71 +0.7
963,647 + Synpcc7942_0955 0.72 -2.4
963,648 - Synpcc7942_0955 0.72 -1.8
963,674 - Synpcc7942_0955 0.77 +0.0
963,676 + Synpcc7942_0955 0.78 +0.6
963,769 - -0.1
963,801 - +0.2
963,801 - -1.3
963,823 + +0.2
963,824 - -0.3
963,863 + -0.8
963,863 + +0.8
963,863 + +0.6
963,863 + -0.5
963,863 + -2.2
963,864 + +0.1
963,865 + -1.1
963,866 - -0.3
963,871 - -2.2
963,871 - +0.9
963,871 - +0.7
963,871 - -1.6
963,871 - +1.2
963,871 - -1.4
963,871 - -1.4
963,878 + +1.6
963,878 + +0.4
963,886 - -0.7
963,886 - -0.6
963,886 - -1.5
963,887 - -1.2
963,897 - -0.2
964,014 + -0.8
964,023 - -1.4
964,043 - Synpcc7942_0956 0.10 -1.2
964,043 - Synpcc7942_0956 0.10 -0.6
964,068 - Synpcc7942_0956 0.12 +0.0
964,068 - Synpcc7942_0956 0.12 -0.3
964,138 - Synpcc7942_0956 0.19 -1.2
964,150 - Synpcc7942_0956 0.20 +0.2
964,158 - Synpcc7942_0956 0.20 -0.9
964,172 + Synpcc7942_0956 0.22 -0.7
964,256 + Synpcc7942_0956 0.29 +0.1
964,280 + Synpcc7942_0956 0.31 -1.5
964,304 - Synpcc7942_0956 0.33 -0.7
964,310 + Synpcc7942_0956 0.34 +0.5
964,354 + Synpcc7942_0956 0.37 -2.6
964,357 + Synpcc7942_0956 0.38 -1.0
964,362 - Synpcc7942_0956 0.38 +1.0
964,402 + Synpcc7942_0956 0.42 +0.1
964,426 + Synpcc7942_0956 0.44 -0.8
964,439 - Synpcc7942_0956 0.45 -0.8
964,532 - Synpcc7942_0956 0.53 -1.1
964,595 - Synpcc7942_0956 0.59 -1.4
964,670 + Synpcc7942_0956 0.65 -0.6
964,758 + Synpcc7942_0956 0.73 -0.8
964,766 - Synpcc7942_0956 0.73 -1.7

Or see this region's nucleotide sequence