Experiment: No grazer plate rep 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0779 and Synpcc7942_0780 overlap by 9 nucleotides Synpcc7942_0780 and ppsA are separated by 45 nucleotides
Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593
_0779
Synpcc7942_0780: Synpcc7942_0780 - serine/threonine protein kinase, at 772,585 to 773,958
_0780
Synpcc7942_0781: ppsA - phosphoenolpyruvate synthase, at 774,004 to 776,520
ppsA
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.439 kb on - strand at 772.489 kb on + strand at 772.567 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.638 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on + strand at 772.705 kb on - strand at 772.748 kb on + strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.854 kb on - strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 773.047 kb on - strand, within Synpcc7942_0780 at 773.087 kb on + strand, within Synpcc7942_0780 at 773.095 kb on + strand, within Synpcc7942_0780 at 773.103 kb on - strand at 773.103 kb on - strand, within Synpcc7942_0780 at 773.136 kb on + strand, within Synpcc7942_0780 at 773.144 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.191 kb on + strand, within Synpcc7942_0780 at 773.230 kb on + strand, within Synpcc7942_0780 at 773.268 kb on + strand, within Synpcc7942_0780 at 773.276 kb on - strand, within Synpcc7942_0780 at 773.298 kb on - strand, within Synpcc7942_0780 at 773.337 kb on + strand, within Synpcc7942_0780 at 773.340 kb on - strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.357 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.372 kb on - strand, within Synpcc7942_0780 at 773.380 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.410 kb on - strand, within Synpcc7942_0780 at 773.415 kb on - strand, within Synpcc7942_0780 at 773.431 kb on - strand, within Synpcc7942_0780 at 773.432 kb on - strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.491 kb on - strand at 773.491 kb on - strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.586 kb on - strand, within Synpcc7942_0780 at 773.592 kb on - strand, within Synpcc7942_0780 at 773.596 kb on + strand, within Synpcc7942_0780 at 773.599 kb on + strand, within Synpcc7942_0780 at 773.599 kb on - strand, within Synpcc7942_0780 at 773.607 kb on + strand, within Synpcc7942_0780 at 773.615 kb on - strand, within Synpcc7942_0780 at 773.668 kb on - strand, within Synpcc7942_0780 at 773.684 kb on - strand, within Synpcc7942_0780 at 773.686 kb on + strand, within Synpcc7942_0780 at 773.704 kb on + strand, within Synpcc7942_0780 at 773.709 kb on - strand, within Synpcc7942_0780 at 773.711 kb on + strand, within Synpcc7942_0780 at 773.757 kb on - strand, within Synpcc7942_0780 at 773.851 kb on + strand at 773.875 kb on + strand at 773.880 kb on + strand at 773.893 kb on - strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.898 kb on + strand at 773.903 kb on - strand at 773.908 kb on + strand at 773.926 kb on + strand at 773.926 kb on + strand at 773.959 kb on - strand at 773.959 kb on - strand at 773.961 kb on - strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.990 kb on - strand at 773.990 kb on - strand at 773.994 kb on + strand at 774.000 kb on - strand at 774.002 kb on - strand at 774.010 kb on - strand at 774.010 kb on - strand at 774.015 kb on - strand at 774.017 kb on + strand at 774.025 kb on - strand at 774.025 kb on - strand at 774.044 kb on + strand at 774.082 kb on - strand at 774.082 kb on - strand at 774.093 kb on - strand at 774.184 kb on - strand at 774.185 kb on - strand at 774.235 kb on + strand at 774.267 kb on - strand, within ppsA at 774.291 kb on + strand, within ppsA at 774.294 kb on - strand, within ppsA at 774.299 kb on - strand, within ppsA at 774.315 kb on + strand, within ppsA at 774.336 kb on + strand, within ppsA at 774.336 kb on - strand, within ppsA at 774.344 kb on - strand, within ppsA at 774.346 kb on + strand, within ppsA at 774.353 kb on + strand, within ppsA at 774.354 kb on - strand, within ppsA at 774.361 kb on - strand, within ppsA at 774.363 kb on + strand, within ppsA at 774.363 kb on - strand, within ppsA at 774.371 kb on - strand, within ppsA at 774.374 kb on + strand, within ppsA at 774.378 kb on - strand, within ppsA at 774.382 kb on - strand, within ppsA at 774.425 kb on + strand, within ppsA at 774.445 kb on + strand, within ppsA at 774.463 kb on - strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.485 kb on - strand, within ppsA at 774.489 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.492 kb on + strand, within ppsA at 774.495 kb on - strand, within ppsA at 774.512 kb on + strand, within ppsA at 774.543 kb on + strand, within ppsA at 774.543 kb on - strand, within ppsA at 774.558 kb on + strand, within ppsA at 774.566 kb on - strand at 774.566 kb on - strand, within ppsA at 774.620 kb on - strand, within ppsA at 774.723 kb on + strand, within ppsA at 774.731 kb on - strand, within ppsA at 774.813 kb on + strand, within ppsA at 774.821 kb on - strand, within ppsA at 774.872 kb on + strand, within ppsA at 774.875 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.912 kb on + strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.921 kb on - strand, within ppsA at 774.954 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on - strand, within ppsA at 774.956 kb on - strand, within ppsA
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 2 remove 772,439 - +0.6 772,489 + +1.8 772,567 + +1.0 772,572 + -0.9 772,572 + -1.6 772,572 + -1.1 772,638 + -0.2 772,696 + +0.2 772,696 + -1.0 772,697 + -0.9 772,705 - -0.2 772,748 + Synpcc7942_0780 0.12 -2.8 772,807 - Synpcc7942_0780 0.16 -0.9 772,807 - Synpcc7942_0780 0.16 -0.3 772,854 - Synpcc7942_0780 0.20 -0.5 772,996 + Synpcc7942_0780 0.30 -2.8 772,996 + Synpcc7942_0780 0.30 -0.5 773,047 - Synpcc7942_0780 0.34 -0.5 773,087 + Synpcc7942_0780 0.37 +0.6 773,095 + Synpcc7942_0780 0.37 +0.1 773,103 - +2.2 773,103 - Synpcc7942_0780 0.38 +0.4 773,136 + Synpcc7942_0780 0.40 -1.9 773,144 - Synpcc7942_0780 0.41 +0.2 773,160 - Synpcc7942_0780 0.42 -2.3 773,160 - Synpcc7942_0780 0.42 -0.8 773,160 - Synpcc7942_0780 0.42 -2.4 773,191 + Synpcc7942_0780 0.44 +1.0 773,230 + Synpcc7942_0780 0.47 +0.4 773,268 + Synpcc7942_0780 0.50 -1.0 773,276 - Synpcc7942_0780 0.50 +1.8 773,298 - Synpcc7942_0780 0.52 +0.2 773,337 + Synpcc7942_0780 0.55 +0.5 773,340 - Synpcc7942_0780 0.55 +0.7 773,351 + Synpcc7942_0780 0.56 +0.5 773,351 + Synpcc7942_0780 0.56 -0.1 773,357 - Synpcc7942_0780 0.56 +1.1 773,359 - Synpcc7942_0780 0.56 -0.2 773,359 - Synpcc7942_0780 0.56 -0.5 773,359 - Synpcc7942_0780 0.56 -0.9 773,372 - Synpcc7942_0780 0.57 -0.1 773,380 - Synpcc7942_0780 0.58 +0.1 773,382 - Synpcc7942_0780 0.58 +1.0 773,382 - Synpcc7942_0780 0.58 +0.1 773,388 - Synpcc7942_0780 0.58 -0.9 773,388 - Synpcc7942_0780 0.58 -0.3 773,402 + Synpcc7942_0780 0.59 -1.4 773,402 + Synpcc7942_0780 0.59 +1.0 773,402 + Synpcc7942_0780 0.59 +0.0 773,402 + Synpcc7942_0780 0.59 -0.7 773,410 - Synpcc7942_0780 0.60 -0.6 773,415 - Synpcc7942_0780 0.60 -0.5 773,431 - Synpcc7942_0780 0.62 -0.3 773,432 - Synpcc7942_0780 0.62 -0.5 773,458 + Synpcc7942_0780 0.64 +0.1 773,458 + Synpcc7942_0780 0.64 -0.7 773,466 - Synpcc7942_0780 0.64 -0.5 773,466 - Synpcc7942_0780 0.64 +0.6 773,483 + Synpcc7942_0780 0.65 -0.7 773,483 + Synpcc7942_0780 0.65 -0.2 773,483 + Synpcc7942_0780 0.65 -0.8 773,491 - +0.5 773,491 - Synpcc7942_0780 0.66 -0.6 773,550 + Synpcc7942_0780 0.70 -0.8 773,550 + Synpcc7942_0780 0.70 -0.5 773,558 - Synpcc7942_0780 0.71 -0.6 773,558 - Synpcc7942_0780 0.71 -0.9 773,586 - Synpcc7942_0780 0.73 -1.2 773,592 - Synpcc7942_0780 0.73 -0.2 773,596 + Synpcc7942_0780 0.74 -1.5 773,599 + Synpcc7942_0780 0.74 -0.7 773,599 - Synpcc7942_0780 0.74 -0.9 773,607 + Synpcc7942_0780 0.74 +0.0 773,615 - Synpcc7942_0780 0.75 -0.5 773,668 - Synpcc7942_0780 0.79 -0.1 773,684 - Synpcc7942_0780 0.80 +0.2 773,686 + Synpcc7942_0780 0.80 -1.9 773,704 + Synpcc7942_0780 0.81 -0.3 773,709 - Synpcc7942_0780 0.82 -0.9 773,711 + Synpcc7942_0780 0.82 -1.4 773,757 - Synpcc7942_0780 0.85 -0.7 773,851 + +0.1 773,875 + -0.9 773,880 + -0.4 773,893 - -1.4 773,895 + +0.3 773,895 + +1.6 773,895 + -0.1 773,895 + -1.4 773,898 + -1.7 773,903 - +0.9 773,908 + -0.5 773,926 + -0.0 773,926 + +0.3 773,959 - -0.4 773,959 - +0.4 773,961 - +0.2 773,982 + -0.3 773,982 + -2.7 773,982 + -3.5 773,990 - -0.0 773,990 - +0.4 773,994 + +1.0 774,000 - -1.4 774,002 - -0.9 774,010 - -1.0 774,010 - -0.9 774,015 - +0.3 774,017 + -0.4 774,025 - -1.1 774,025 - +1.2 774,044 + -1.1 774,082 - -0.6 774,082 - -0.2 774,093 - +1.3 774,184 - -1.0 774,185 - -0.9 774,235 + -1.0 774,267 - ppsA Synpcc7942_0781 0.10 +0.2 774,291 + ppsA Synpcc7942_0781 0.11 +0.8 774,294 - ppsA Synpcc7942_0781 0.12 +0.0 774,299 - ppsA Synpcc7942_0781 0.12 -0.1 774,315 + ppsA Synpcc7942_0781 0.12 -0.2 774,336 + ppsA Synpcc7942_0781 0.13 -1.6 774,336 - ppsA Synpcc7942_0781 0.13 +1.3 774,344 - ppsA Synpcc7942_0781 0.14 +0.9 774,346 + ppsA Synpcc7942_0781 0.14 +0.3 774,353 + ppsA Synpcc7942_0781 0.14 +1.8 774,354 - ppsA Synpcc7942_0781 0.14 +0.9 774,361 - ppsA Synpcc7942_0781 0.14 -0.2 774,363 + ppsA Synpcc7942_0781 0.14 +0.3 774,363 - ppsA Synpcc7942_0781 0.14 +0.9 774,371 - ppsA Synpcc7942_0781 0.15 -1.0 774,374 + ppsA Synpcc7942_0781 0.15 +0.4 774,378 - ppsA Synpcc7942_0781 0.15 -0.8 774,382 - ppsA Synpcc7942_0781 0.15 +0.5 774,425 + ppsA Synpcc7942_0781 0.17 -2.2 774,445 + ppsA Synpcc7942_0781 0.18 +0.5 774,463 - ppsA Synpcc7942_0781 0.18 -1.6 774,482 + ppsA Synpcc7942_0781 0.19 -0.4 774,482 + ppsA Synpcc7942_0781 0.19 +0.7 774,482 + ppsA Synpcc7942_0781 0.19 -1.8 774,485 - ppsA Synpcc7942_0781 0.19 -0.4 774,489 - ppsA Synpcc7942_0781 0.19 +0.4 774,490 - ppsA Synpcc7942_0781 0.19 -1.6 774,490 - ppsA Synpcc7942_0781 0.19 +0.8 774,490 - ppsA Synpcc7942_0781 0.19 -1.0 774,490 - ppsA Synpcc7942_0781 0.19 -1.9 774,490 - ppsA Synpcc7942_0781 0.19 -0.1 774,490 - ppsA Synpcc7942_0781 0.19 +1.7 774,492 + ppsA Synpcc7942_0781 0.19 +0.8 774,495 - ppsA Synpcc7942_0781 0.20 -0.1 774,512 + ppsA Synpcc7942_0781 0.20 +0.5 774,543 + ppsA Synpcc7942_0781 0.21 -0.0 774,543 - ppsA Synpcc7942_0781 0.21 -0.9 774,558 + ppsA Synpcc7942_0781 0.22 -1.1 774,566 - +1.0 774,566 - ppsA Synpcc7942_0781 0.22 +0.2 774,620 - ppsA Synpcc7942_0781 0.24 -0.4 774,723 + ppsA Synpcc7942_0781 0.29 -0.7 774,731 - ppsA Synpcc7942_0781 0.29 -0.7 774,813 + ppsA Synpcc7942_0781 0.32 +0.2 774,821 - ppsA Synpcc7942_0781 0.32 +0.9 774,872 + ppsA Synpcc7942_0781 0.34 -1.6 774,875 - ppsA Synpcc7942_0781 0.35 -3.0 774,890 - ppsA Synpcc7942_0781 0.35 -1.1 774,890 - ppsA Synpcc7942_0781 0.35 -0.7 774,912 + ppsA Synpcc7942_0781 0.36 -0.7 774,920 - ppsA Synpcc7942_0781 0.36 -2.2 774,920 - ppsA Synpcc7942_0781 0.36 -0.1 774,920 - ppsA Synpcc7942_0781 0.36 -0.6 774,921 - ppsA Synpcc7942_0781 0.36 -0.5 774,954 + ppsA Synpcc7942_0781 0.38 -0.5 774,956 + ppsA Synpcc7942_0781 0.38 -0.3 774,956 + ppsA Synpcc7942_0781 0.38 -1.3 774,956 + ppsA Synpcc7942_0781 0.38 +0.2 774,956 - ppsA Synpcc7942_0781 0.38 -0.9 774,956 - ppsA Synpcc7942_0781 0.38 +1.5
Or see this region's nucleotide sequence