Experiment: No grazer plate rep 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0771 and Synpcc7942_0772 are separated by 129 nucleotides Synpcc7942_0772 and ycf52 are separated by 14 nucleotides ycf52 and Synpcc7942_0774 are separated by 18 nucleotides
Synpcc7942_0771: Synpcc7942_0771 - hypothetical protein, at 763,640 to 764,854
_0771
Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577
_0772
Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197
ycf52
Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103
_0774
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 763.995 kb on + strand, within Synpcc7942_0771 at 764.003 kb on - strand, within Synpcc7942_0771 at 764.022 kb on - strand at 764.035 kb on - strand, within Synpcc7942_0771 at 764.042 kb on + strand, within Synpcc7942_0771 at 764.042 kb on + strand, within Synpcc7942_0771 at 764.050 kb on - strand, within Synpcc7942_0771 at 764.084 kb on - strand, within Synpcc7942_0771 at 764.085 kb on - strand, within Synpcc7942_0771 at 764.108 kb on - strand, within Synpcc7942_0771 at 764.119 kb on - strand, within Synpcc7942_0771 at 764.136 kb on - strand, within Synpcc7942_0771 at 764.167 kb on + strand, within Synpcc7942_0771 at 764.167 kb on + strand, within Synpcc7942_0771 at 764.191 kb on + strand, within Synpcc7942_0771 at 764.199 kb on - strand, within Synpcc7942_0771 at 764.201 kb on + strand, within Synpcc7942_0771 at 764.208 kb on + strand, within Synpcc7942_0771 at 764.208 kb on + strand, within Synpcc7942_0771 at 764.214 kb on - strand, within Synpcc7942_0771 at 764.230 kb on + strand, within Synpcc7942_0771 at 764.230 kb on + strand, within Synpcc7942_0771 at 764.245 kb on + strand, within Synpcc7942_0771 at 764.278 kb on + strand, within Synpcc7942_0771 at 764.286 kb on - strand, within Synpcc7942_0771 at 764.286 kb on - strand, within Synpcc7942_0771 at 764.286 kb on - strand, within Synpcc7942_0771 at 764.315 kb on + strand, within Synpcc7942_0771 at 764.315 kb on + strand, within Synpcc7942_0771 at 764.315 kb on + strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.323 kb on - strand, within Synpcc7942_0771 at 764.325 kb on + strand, within Synpcc7942_0771 at 764.336 kb on + strand, within Synpcc7942_0771 at 764.344 kb on - strand, within Synpcc7942_0771 at 764.394 kb on + strand, within Synpcc7942_0771 at 764.402 kb on - strand, within Synpcc7942_0771 at 764.418 kb on + strand, within Synpcc7942_0771 at 764.426 kb on - strand, within Synpcc7942_0771 at 764.426 kb on - strand, within Synpcc7942_0771 at 764.444 kb on + strand, within Synpcc7942_0771 at 764.450 kb on + strand, within Synpcc7942_0771 at 764.452 kb on - strand, within Synpcc7942_0771 at 764.457 kb on - strand, within Synpcc7942_0771 at 764.458 kb on - strand, within Synpcc7942_0771 at 764.458 kb on - strand, within Synpcc7942_0771 at 764.458 kb on - strand, within Synpcc7942_0771 at 764.459 kb on - strand, within Synpcc7942_0771 at 764.473 kb on + strand, within Synpcc7942_0771 at 764.474 kb on + strand, within Synpcc7942_0771 at 764.477 kb on + strand, within Synpcc7942_0771 at 764.485 kb on - strand, within Synpcc7942_0771 at 764.520 kb on - strand at 764.520 kb on - strand, within Synpcc7942_0771 at 764.590 kb on + strand, within Synpcc7942_0771 at 764.600 kb on - strand, within Synpcc7942_0771 at 764.613 kb on + strand, within Synpcc7942_0771 at 764.615 kb on + strand, within Synpcc7942_0771 at 764.622 kb on + strand, within Synpcc7942_0771 at 764.659 kb on + strand, within Synpcc7942_0771 at 764.665 kb on + strand, within Synpcc7942_0771 at 764.665 kb on + strand, within Synpcc7942_0771 at 764.673 kb on - strand, within Synpcc7942_0771 at 764.677 kb on + strand, within Synpcc7942_0771 at 764.678 kb on - strand, within Synpcc7942_0771 at 764.678 kb on - strand, within Synpcc7942_0771 at 764.714 kb on + strand, within Synpcc7942_0771 at 764.719 kb on + strand, within Synpcc7942_0771 at 764.719 kb on + strand, within Synpcc7942_0771 at 764.720 kb on - strand, within Synpcc7942_0771 at 764.727 kb on - strand at 764.739 kb on - strand at 764.754 kb on - strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.765 kb on + strand at 764.773 kb on - strand at 764.824 kb on + strand at 764.829 kb on + strand at 764.895 kb on + strand at 764.902 kb on + strand at 764.908 kb on - strand at 764.910 kb on - strand at 764.942 kb on + strand at 764.950 kb on - strand at 764.950 kb on - strand at 764.983 kb on - strand at 765.003 kb on - strand at 765.020 kb on + strand at 765.022 kb on + strand at 765.028 kb on - strand at 765.094 kb on + strand, within Synpcc7942_0772 at 765.114 kb on + strand, within Synpcc7942_0772 at 765.114 kb on - strand, within Synpcc7942_0772 at 765.128 kb on + strand, within Synpcc7942_0772 at 765.153 kb on - strand, within Synpcc7942_0772 at 765.167 kb on - strand, within Synpcc7942_0772 at 765.295 kb on + strand, within Synpcc7942_0772 at 765.308 kb on - strand, within Synpcc7942_0772 at 765.310 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.355 kb on - strand, within Synpcc7942_0772 at 765.377 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.414 kb on + strand, within Synpcc7942_0772 at 765.420 kb on - strand, within Synpcc7942_0772 at 765.422 kb on - strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.435 kb on + strand, within Synpcc7942_0772 at 765.436 kb on + strand, within Synpcc7942_0772 at 765.456 kb on + strand, within Synpcc7942_0772 at 765.464 kb on - strand, within Synpcc7942_0772 at 765.521 kb on + strand at 765.523 kb on - strand at 765.535 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.547 kb on + strand at 765.550 kb on - strand at 765.550 kb on - strand at 765.552 kb on + strand at 765.553 kb on - strand at 765.579 kb on - strand at 765.581 kb on - strand at 765.687 kb on + strand, within ycf52 at 765.701 kb on + strand, within ycf52 at 765.748 kb on + strand, within ycf52 at 765.762 kb on - strand, within ycf52 at 765.786 kb on - strand, within ycf52 at 765.813 kb on + strand, within ycf52 at 765.850 kb on + strand, within ycf52 at 765.856 kb on + strand, within ycf52 at 765.919 kb on + strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 766.014 kb on - strand, within ycf52 at 766.048 kb on - strand, within ycf52 at 766.085 kb on - strand, within ycf52 at 766.092 kb on - strand, within ycf52 at 766.100 kb on + strand, within ycf52 at 766.101 kb on - strand, within ycf52 at 766.113 kb on - strand, within ycf52 at 766.143 kb on - strand at 766.154 kb on + strand at 766.154 kb on + strand at 766.162 kb on - strand at 766.182 kb on - strand at 766.186 kb on - strand at 766.221 kb on - strand at 766.248 kb on - strand at 766.250 kb on + strand at 766.258 kb on - strand at 766.272 kb on - strand at 766.310 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.339 kb on + strand, within Synpcc7942_0774 at 766.354 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.415 kb on + strand, within Synpcc7942_0774 at 766.418 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.436 kb on - strand, within Synpcc7942_0774 at 766.473 kb on - strand, within Synpcc7942_0774 at 766.482 kb on - strand, within Synpcc7942_0774 at 766.509 kb on + strand, within Synpcc7942_0774 at 766.523 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.540 kb on + strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 2 remove 763,995 + Synpcc7942_0771 0.29 -0.2 763,995 + Synpcc7942_0771 0.29 +0.4 763,995 + Synpcc7942_0771 0.29 -0.8 763,995 + Synpcc7942_0771 0.29 +0.2 763,995 + Synpcc7942_0771 0.29 -1.4 764,003 - Synpcc7942_0771 0.30 -3.2 764,022 - +1.2 764,035 - Synpcc7942_0771 0.33 +0.2 764,042 + Synpcc7942_0771 0.33 -1.5 764,042 + Synpcc7942_0771 0.33 -2.1 764,050 - Synpcc7942_0771 0.34 -1.2 764,084 - Synpcc7942_0771 0.37 +0.2 764,085 - Synpcc7942_0771 0.37 -0.8 764,108 - Synpcc7942_0771 0.39 +0.2 764,119 - Synpcc7942_0771 0.39 -0.8 764,136 - Synpcc7942_0771 0.41 +0.0 764,167 + Synpcc7942_0771 0.43 -0.3 764,167 + Synpcc7942_0771 0.43 -0.1 764,191 + Synpcc7942_0771 0.45 -0.3 764,199 - Synpcc7942_0771 0.46 -0.2 764,201 + Synpcc7942_0771 0.46 -1.5 764,208 + Synpcc7942_0771 0.47 +0.1 764,208 + Synpcc7942_0771 0.47 -1.2 764,214 - Synpcc7942_0771 0.47 -0.2 764,230 + Synpcc7942_0771 0.49 +0.2 764,230 + Synpcc7942_0771 0.49 -1.3 764,245 + Synpcc7942_0771 0.50 +0.3 764,278 + Synpcc7942_0771 0.53 +0.7 764,286 - Synpcc7942_0771 0.53 -0.8 764,286 - Synpcc7942_0771 0.53 +0.8 764,286 - Synpcc7942_0771 0.53 +0.8 764,315 + Synpcc7942_0771 0.56 -1.7 764,315 + Synpcc7942_0771 0.56 -3.6 764,315 + Synpcc7942_0771 0.56 -0.2 764,323 - Synpcc7942_0771 0.56 +0.3 764,323 - Synpcc7942_0771 0.56 -0.4 764,323 - Synpcc7942_0771 0.56 -1.1 764,323 - Synpcc7942_0771 0.56 +0.4 764,323 - Synpcc7942_0771 0.56 -0.5 764,325 + Synpcc7942_0771 0.56 -0.1 764,336 + Synpcc7942_0771 0.57 +0.0 764,344 - Synpcc7942_0771 0.58 -0.9 764,394 + Synpcc7942_0771 0.62 +0.3 764,402 - Synpcc7942_0771 0.63 -1.6 764,418 + Synpcc7942_0771 0.64 +0.6 764,426 - Synpcc7942_0771 0.65 -0.6 764,426 - Synpcc7942_0771 0.65 +0.3 764,444 + Synpcc7942_0771 0.66 +0.7 764,450 + Synpcc7942_0771 0.67 +0.1 764,452 - Synpcc7942_0771 0.67 +1.4 764,457 - Synpcc7942_0771 0.67 -1.5 764,458 - Synpcc7942_0771 0.67 +0.2 764,458 - Synpcc7942_0771 0.67 +0.1 764,458 - Synpcc7942_0771 0.67 +0.6 764,459 - Synpcc7942_0771 0.67 +1.4 764,473 + Synpcc7942_0771 0.69 -1.0 764,474 + Synpcc7942_0771 0.69 -3.2 764,477 + Synpcc7942_0771 0.69 -0.2 764,485 - Synpcc7942_0771 0.70 -1.5 764,520 - -0.2 764,520 - Synpcc7942_0771 0.72 -0.4 764,590 + Synpcc7942_0771 0.78 -1.7 764,600 - Synpcc7942_0771 0.79 -1.1 764,613 + Synpcc7942_0771 0.80 +0.5 764,615 + Synpcc7942_0771 0.80 -0.4 764,622 + Synpcc7942_0771 0.81 -1.1 764,659 + Synpcc7942_0771 0.84 +0.4 764,665 + Synpcc7942_0771 0.84 +0.9 764,665 + Synpcc7942_0771 0.84 -0.9 764,673 - Synpcc7942_0771 0.85 +2.5 764,677 + Synpcc7942_0771 0.85 -1.3 764,678 - Synpcc7942_0771 0.85 -0.1 764,678 - Synpcc7942_0771 0.85 +0.4 764,714 + Synpcc7942_0771 0.88 +0.1 764,719 + Synpcc7942_0771 0.89 -1.3 764,719 + Synpcc7942_0771 0.89 +0.3 764,720 - Synpcc7942_0771 0.89 +1.7 764,727 - +2.2 764,739 - +0.3 764,754 - -0.5 764,755 + -2.2 764,755 + -0.6 764,755 + -1.9 764,755 + +1.4 764,755 + -0.2 764,755 + -1.5 764,763 - -1.8 764,763 - +1.8 764,763 - -0.3 764,763 - -0.6 764,765 + +0.1 764,773 - -0.5 764,824 + +0.5 764,829 + -1.4 764,895 + +1.6 764,902 + -0.6 764,908 - -0.2 764,910 - -1.1 764,942 + -0.4 764,950 - -1.2 764,950 - -0.2 764,983 - -1.3 765,003 - +0.8 765,020 + -0.2 765,022 + -2.4 765,028 - -0.5 765,094 + Synpcc7942_0772 0.19 +1.2 765,114 + Synpcc7942_0772 0.22 -0.3 765,114 - Synpcc7942_0772 0.22 +0.1 765,128 + Synpcc7942_0772 0.24 +0.4 765,153 - Synpcc7942_0772 0.28 -0.5 765,167 - Synpcc7942_0772 0.31 -0.1 765,295 + Synpcc7942_0772 0.52 -1.0 765,308 - Synpcc7942_0772 0.55 +1.2 765,310 - Synpcc7942_0772 0.55 -1.0 765,338 - Synpcc7942_0772 0.60 -0.4 765,338 - Synpcc7942_0772 0.60 +0.4 765,355 - Synpcc7942_0772 0.62 -1.5 765,377 + Synpcc7942_0772 0.66 -1.8 765,390 + Synpcc7942_0772 0.68 +1.1 765,390 + Synpcc7942_0772 0.68 -1.7 765,414 + Synpcc7942_0772 0.72 -0.8 765,420 - Synpcc7942_0772 0.73 -0.3 765,422 - Synpcc7942_0772 0.74 -0.2 765,424 + Synpcc7942_0772 0.74 +0.4 765,424 + Synpcc7942_0772 0.74 +0.0 765,424 + Synpcc7942_0772 0.74 -0.8 765,424 + Synpcc7942_0772 0.74 -0.2 765,424 + Synpcc7942_0772 0.74 -2.5 765,424 + Synpcc7942_0772 0.74 -1.6 765,424 + Synpcc7942_0772 0.74 +0.3 765,432 - Synpcc7942_0772 0.75 +0.2 765,432 - Synpcc7942_0772 0.75 -2.2 765,432 - Synpcc7942_0772 0.75 -1.2 765,432 - Synpcc7942_0772 0.75 +2.0 765,432 - Synpcc7942_0772 0.75 -0.5 765,432 - Synpcc7942_0772 0.75 +0.8 765,435 + Synpcc7942_0772 0.76 +0.4 765,436 + Synpcc7942_0772 0.76 +1.2 765,456 + Synpcc7942_0772 0.79 +1.6 765,464 - Synpcc7942_0772 0.81 +0.8 765,521 + +0.1 765,523 - -1.9 765,535 + +1.5 765,542 + +0.3 765,542 + -0.3 765,542 + -0.1 765,547 + -1.5 765,550 - +0.5 765,550 - -1.7 765,552 + -0.2 765,553 - +0.0 765,579 - +0.8 765,581 - +0.6 765,687 + ycf52 Synpcc7942_0773 0.16 +1.9 765,701 + ycf52 Synpcc7942_0773 0.18 +1.5 765,748 + ycf52 Synpcc7942_0773 0.26 +0.7 765,762 - ycf52 Synpcc7942_0773 0.28 +2.8 765,786 - ycf52 Synpcc7942_0773 0.32 +0.7 765,813 + ycf52 Synpcc7942_0773 0.36 +2.6 765,850 + ycf52 Synpcc7942_0773 0.43 +3.4 765,856 + ycf52 Synpcc7942_0773 0.44 +2.8 765,919 + ycf52 Synpcc7942_0773 0.54 +0.6 765,952 - ycf52 Synpcc7942_0773 0.59 +2.0 765,952 - ycf52 Synpcc7942_0773 0.59 +1.7 766,014 - ycf52 Synpcc7942_0773 0.70 -0.3 766,048 - ycf52 Synpcc7942_0773 0.75 +2.6 766,085 - ycf52 Synpcc7942_0773 0.81 +2.5 766,092 - ycf52 Synpcc7942_0773 0.83 +2.0 766,100 + ycf52 Synpcc7942_0773 0.84 +2.6 766,101 - ycf52 Synpcc7942_0773 0.84 +1.3 766,113 - ycf52 Synpcc7942_0773 0.86 +2.3 766,143 - +4.0 766,154 + +0.5 766,154 + +0.5 766,162 - +1.0 766,182 - +0.7 766,186 - -0.0 766,221 - -0.6 766,248 - +0.6 766,250 + -0.7 766,258 - -2.0 766,272 - -0.9 766,310 + Synpcc7942_0774 0.11 -0.6 766,322 + Synpcc7942_0774 0.12 +1.0 766,322 + Synpcc7942_0774 0.12 -0.0 766,339 + Synpcc7942_0774 0.14 +0.1 766,354 - Synpcc7942_0774 0.16 -0.5 766,375 - Synpcc7942_0774 0.18 -0.4 766,375 - Synpcc7942_0774 0.18 +1.8 766,379 + Synpcc7942_0774 0.18 -0.5 766,379 + Synpcc7942_0774 0.18 -1.1 766,379 + Synpcc7942_0774 0.18 -0.5 766,379 + Synpcc7942_0774 0.18 -0.9 766,387 - Synpcc7942_0774 0.19 +1.0 766,387 - Synpcc7942_0774 0.19 -1.7 766,402 - Synpcc7942_0774 0.21 +0.0 766,402 - Synpcc7942_0774 0.21 -0.0 766,415 + Synpcc7942_0774 0.22 -0.0 766,418 - Synpcc7942_0774 0.23 +0.0 766,423 - Synpcc7942_0774 0.23 -0.6 766,423 - Synpcc7942_0774 0.23 -1.9 766,436 - Synpcc7942_0774 0.25 +0.2 766,473 - Synpcc7942_0774 0.29 -1.9 766,482 - Synpcc7942_0774 0.30 +0.1 766,509 + Synpcc7942_0774 0.33 -0.9 766,523 + Synpcc7942_0774 0.35 -1.1 766,535 + Synpcc7942_0774 0.36 +1.2 766,535 + Synpcc7942_0774 0.36 -3.0 766,540 + Synpcc7942_0774 0.36 +1.3 766,543 - Synpcc7942_0774 0.37 -0.4 766,543 - Synpcc7942_0774 0.37 -0.3 766,545 + Synpcc7942_0774 0.37 -0.1 766,545 + Synpcc7942_0774 0.37 +0.5 766,545 + Synpcc7942_0774 0.37 -2.3 766,545 + Synpcc7942_0774 0.37 -1.9 766,545 + Synpcc7942_0774 0.37 -1.8 766,553 - Synpcc7942_0774 0.38 -1.2 766,553 - Synpcc7942_0774 0.38 -0.0 766,553 - Synpcc7942_0774 0.38 -1.4 766,553 - Synpcc7942_0774 0.38 -0.3
Or see this region's nucleotide sequence