Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0493

Experiment: No grazer plate rep 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntribF and Synpcc7942_0493 are separated by 142 nucleotidesSynpcc7942_0493 and Synpcc7942_0494 are separated by 179 nucleotidesSynpcc7942_0494 and Synpcc7942_0495 overlap by 4 nucleotides Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824 ribF Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451 _0493 Synpcc7942_0494: Synpcc7942_0494 - hypothetical protein, at 482,631 to 482,984 _0494 Synpcc7942_0495: Synpcc7942_0495 - hypothetical protein, at 482,981 to 483,517 _0495 Position (kb) 480 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 480.839 kb on - strandat 480.848 kb on + strandat 480.853 kb on + strandat 480.853 kb on + strandat 480.861 kb on - strandat 480.862 kb on - strandat 480.862 kb on - strandat 480.862 kb on - strandat 480.887 kb on + strandat 480.887 kb on + strandat 480.887 kb on + strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.910 kb on - strandat 480.913 kb on + strandat 480.936 kb on + strandat 480.977 kb on + strandat 480.977 kb on + strandat 481.096 kb on - strandat 481.099 kb on + strandat 481.135 kb on + strand, within Synpcc7942_0493at 481.143 kb on - strand, within Synpcc7942_0493at 481.169 kb on + strand, within Synpcc7942_0493at 481.169 kb on + strand, within Synpcc7942_0493at 481.251 kb on + strand, within Synpcc7942_0493at 481.265 kb on - strand, within Synpcc7942_0493at 481.289 kb on - strand, within Synpcc7942_0493at 481.333 kb on + strand, within Synpcc7942_0493at 481.357 kb on - strand, within Synpcc7942_0493at 481.359 kb on + strand, within Synpcc7942_0493at 481.367 kb on - strand, within Synpcc7942_0493at 481.394 kb on + strand, within Synpcc7942_0493at 481.419 kb on - strand, within Synpcc7942_0493at 481.428 kb on - strand, within Synpcc7942_0493at 481.438 kb on - strand, within Synpcc7942_0493at 481.473 kb on + strand, within Synpcc7942_0493at 481.473 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.533 kb on - strand, within Synpcc7942_0493at 481.597 kb on - strand, within Synpcc7942_0493at 481.597 kb on - strand, within Synpcc7942_0493at 481.674 kb on + strand, within Synpcc7942_0493at 481.682 kb on - strand, within Synpcc7942_0493at 481.689 kb on + strand, within Synpcc7942_0493at 481.697 kb on - strand, within Synpcc7942_0493at 481.702 kb on - strand, within Synpcc7942_0493at 481.708 kb on - strand, within Synpcc7942_0493at 481.709 kb on - strand, within Synpcc7942_0493at 481.783 kb on - strand, within Synpcc7942_0493at 481.862 kb on + strand, within Synpcc7942_0493at 481.867 kb on + strand, within Synpcc7942_0493at 481.907 kb on - strand, within Synpcc7942_0493at 481.908 kb on - strand, within Synpcc7942_0493at 481.957 kb on + strandat 481.959 kb on + strand, within Synpcc7942_0493at 481.962 kb on + strand, within Synpcc7942_0493at 481.974 kb on + strand, within Synpcc7942_0493at 481.974 kb on + strand, within Synpcc7942_0493at 481.982 kb on - strand, within Synpcc7942_0493at 481.987 kb on - strand, within Synpcc7942_0493at 482.030 kb on - strand, within Synpcc7942_0493at 482.071 kb on + strand, within Synpcc7942_0493at 482.084 kb on - strand, within Synpcc7942_0493at 482.091 kb on + strand, within Synpcc7942_0493at 482.100 kb on - strand, within Synpcc7942_0493at 482.156 kb on - strand, within Synpcc7942_0493at 482.178 kb on - strand, within Synpcc7942_0493at 482.181 kb on - strand, within Synpcc7942_0493at 482.181 kb on - strand, within Synpcc7942_0493at 482.189 kb on + strand, within Synpcc7942_0493at 482.218 kb on + strand, within Synpcc7942_0493at 482.228 kb on + strand, within Synpcc7942_0493at 482.239 kb on + strand, within Synpcc7942_0493at 482.239 kb on + strand, within Synpcc7942_0493at 482.239 kb on + strandat 482.239 kb on + strand, within Synpcc7942_0493at 482.247 kb on - strand, within Synpcc7942_0493at 482.252 kb on + strand, within Synpcc7942_0493at 482.252 kb on + strandat 482.252 kb on + strand, within Synpcc7942_0493at 482.286 kb on + strand, within Synpcc7942_0493at 482.318 kb on - strandat 482.318 kb on - strandat 482.318 kb on - strandat 482.362 kb on + strandat 482.386 kb on + strandat 482.400 kb on - strandat 482.445 kb on + strandat 482.445 kb on + strandat 482.462 kb on - strandat 482.470 kb on + strandat 482.486 kb on + strandat 482.488 kb on - strandat 482.503 kb on - strandat 482.508 kb on - strandat 482.524 kb on + strandat 482.608 kb on - strandat 482.659 kb on + strandat 482.667 kb on - strand, within Synpcc7942_0494at 482.667 kb on - strand, within Synpcc7942_0494at 482.687 kb on + strand, within Synpcc7942_0494at 482.818 kb on + strand, within Synpcc7942_0494at 482.835 kb on + strand, within Synpcc7942_0494at 482.835 kb on + strand, within Synpcc7942_0494at 482.838 kb on - strand, within Synpcc7942_0494at 482.842 kb on + strand, within Synpcc7942_0494at 482.842 kb on + strand, within Synpcc7942_0494at 482.845 kb on + strand, within Synpcc7942_0494at 482.845 kb on + strand, within Synpcc7942_0494at 482.845 kb on + strand, within Synpcc7942_0494at 482.847 kb on + strand, within Synpcc7942_0494at 482.853 kb on - strand, within Synpcc7942_0494at 482.886 kb on + strand, within Synpcc7942_0494at 482.908 kb on + strand, within Synpcc7942_0494at 482.921 kb on - strand, within Synpcc7942_0494at 482.928 kb on + strand, within Synpcc7942_0494at 482.928 kb on - strand, within Synpcc7942_0494at 482.931 kb on - strand, within Synpcc7942_0494at 482.934 kb on + strand, within Synpcc7942_0494at 482.934 kb on + strand, within Synpcc7942_0494at 482.939 kb on + strand, within Synpcc7942_0494at 482.952 kb on - strandat 482.975 kb on + strandat 482.984 kb on + strandat 482.986 kb on + strandat 482.992 kb on - strandat 482.992 kb on - strandat 483.050 kb on - strand, within Synpcc7942_0495at 483.085 kb on + strand, within Synpcc7942_0495at 483.102 kb on - strand, within Synpcc7942_0495at 483.106 kb on + strand, within Synpcc7942_0495at 483.106 kb on + strand, within Synpcc7942_0495at 483.114 kb on - strand, within Synpcc7942_0495at 483.114 kb on - strandat 483.119 kb on - strandat 483.133 kb on + strand, within Synpcc7942_0495at 483.148 kb on + strand, within Synpcc7942_0495at 483.170 kb on - strand, within Synpcc7942_0495at 483.170 kb on - strand, within Synpcc7942_0495at 483.325 kb on - strand, within Synpcc7942_0495at 483.435 kb on - strand, within Synpcc7942_0495

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Per-strain Table

Position Strand Gene LocusTag Fraction No grazer plate rep 2
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480,839 - -1.8
480,848 + -0.5
480,853 + -0.1
480,853 + -0.8
480,861 - -1.7
480,862 - -1.8
480,862 - -0.2
480,862 - -1.1
480,887 + -0.3
480,887 + +1.2
480,887 + -0.6
480,895 - -1.7
480,895 - -1.1
480,895 - -1.9
480,895 - -1.6
480,895 - -0.9
480,910 - +0.4
480,913 + +1.5
480,936 + -0.6
480,977 + -0.3
480,977 + -0.9
481,096 - +3.8
481,099 + -1.5
481,135 + Synpcc7942_0493 0.11 -1.3
481,143 - Synpcc7942_0493 0.12 -0.8
481,169 + Synpcc7942_0493 0.14 -0.1
481,169 + Synpcc7942_0493 0.14 +0.0
481,251 + Synpcc7942_0493 0.19 -1.3
481,265 - Synpcc7942_0493 0.20 -1.2
481,289 - Synpcc7942_0493 0.22 +1.9
481,333 + Synpcc7942_0493 0.25 -1.5
481,357 - Synpcc7942_0493 0.26 -2.2
481,359 + Synpcc7942_0493 0.26 +0.2
481,367 - Synpcc7942_0493 0.27 -0.8
481,394 + Synpcc7942_0493 0.29 -1.2
481,419 - Synpcc7942_0493 0.30 -0.5
481,428 - Synpcc7942_0493 0.31 -1.0
481,438 - Synpcc7942_0493 0.32 -0.8
481,473 + Synpcc7942_0493 0.34 +2.1
481,473 + Synpcc7942_0493 0.34 -0.1
481,521 + Synpcc7942_0493 0.37 -0.3
481,521 + Synpcc7942_0493 0.37 -1.9
481,521 + Synpcc7942_0493 0.37 +0.5
481,521 + Synpcc7942_0493 0.37 +0.4
481,533 - Synpcc7942_0493 0.38 +3.4
481,597 - Synpcc7942_0493 0.42 -1.3
481,597 - Synpcc7942_0493 0.42 +0.4
481,674 + Synpcc7942_0493 0.48 +0.7
481,682 - Synpcc7942_0493 0.48 -0.1
481,689 + Synpcc7942_0493 0.49 +0.9
481,697 - Synpcc7942_0493 0.49 -1.8
481,702 - Synpcc7942_0493 0.49 -2.0
481,708 - Synpcc7942_0493 0.50 -0.4
481,709 - Synpcc7942_0493 0.50 -1.1
481,783 - Synpcc7942_0493 0.55 -0.1
481,862 + Synpcc7942_0493 0.60 -1.5
481,867 + Synpcc7942_0493 0.61 +0.8
481,907 - Synpcc7942_0493 0.63 +0.7
481,908 - Synpcc7942_0493 0.63 +3.1
481,957 + +1.0
481,959 + Synpcc7942_0493 0.67 -0.3
481,962 + Synpcc7942_0493 0.67 -0.2
481,974 + Synpcc7942_0493 0.68 +0.2
481,974 + Synpcc7942_0493 0.68 -1.0
481,982 - Synpcc7942_0493 0.68 -0.3
481,987 - Synpcc7942_0493 0.69 +1.1
482,030 - Synpcc7942_0493 0.72 -0.7
482,071 + Synpcc7942_0493 0.74 -0.7
482,084 - Synpcc7942_0493 0.75 -1.8
482,091 + Synpcc7942_0493 0.76 -2.4
482,100 - Synpcc7942_0493 0.76 -0.3
482,156 - Synpcc7942_0493 0.80 +0.6
482,178 - Synpcc7942_0493 0.82 +0.0
482,181 - Synpcc7942_0493 0.82 +0.9
482,181 - Synpcc7942_0493 0.82 -0.2
482,189 + Synpcc7942_0493 0.82 -0.2
482,218 + Synpcc7942_0493 0.84 -0.1
482,228 + Synpcc7942_0493 0.85 -1.3
482,239 + Synpcc7942_0493 0.86 +0.5
482,239 + Synpcc7942_0493 0.86 +0.0
482,239 + -0.2
482,239 + Synpcc7942_0493 0.86 +1.1
482,247 - Synpcc7942_0493 0.86 -2.2
482,252 + Synpcc7942_0493 0.87 +0.5
482,252 + +0.0
482,252 + Synpcc7942_0493 0.87 -0.6
482,286 + Synpcc7942_0493 0.89 -2.2
482,318 - +0.1
482,318 - +1.4
482,318 - +0.7
482,362 + -0.1
482,386 + -1.1
482,400 - +1.7
482,445 + -3.0
482,445 + +0.0
482,462 - -0.5
482,470 + -1.1
482,486 + -1.2
482,488 - -1.7
482,503 - +1.5
482,508 - -1.7
482,524 + -0.2
482,608 - +0.6
482,659 + -0.6
482,667 - Synpcc7942_0494 0.10 -1.0
482,667 - Synpcc7942_0494 0.10 -0.2
482,687 + Synpcc7942_0494 0.16 +2.0
482,818 + Synpcc7942_0494 0.53 +0.5
482,835 + Synpcc7942_0494 0.58 +0.2
482,835 + Synpcc7942_0494 0.58 -0.5
482,838 - Synpcc7942_0494 0.58 +0.4
482,842 + Synpcc7942_0494 0.60 +0.8
482,842 + Synpcc7942_0494 0.60 -0.9
482,845 + Synpcc7942_0494 0.60 -0.3
482,845 + Synpcc7942_0494 0.60 -0.1
482,845 + Synpcc7942_0494 0.60 -0.3
482,847 + Synpcc7942_0494 0.61 +0.3
482,853 - Synpcc7942_0494 0.63 -0.9
482,886 + Synpcc7942_0494 0.72 -1.8
482,908 + Synpcc7942_0494 0.78 +0.6
482,921 - Synpcc7942_0494 0.82 +0.3
482,928 + Synpcc7942_0494 0.84 -0.7
482,928 - Synpcc7942_0494 0.84 +1.6
482,931 - Synpcc7942_0494 0.85 -3.2
482,934 + Synpcc7942_0494 0.86 +1.2
482,934 + Synpcc7942_0494 0.86 +0.3
482,939 + Synpcc7942_0494 0.87 -0.5
482,952 - -1.6
482,975 + -1.1
482,984 + -1.7
482,986 + +2.2
482,992 - -1.6
482,992 - -0.4
483,050 - Synpcc7942_0495 0.13 +0.1
483,085 + Synpcc7942_0495 0.19 -0.8
483,102 - Synpcc7942_0495 0.23 -0.8
483,106 + Synpcc7942_0495 0.23 +0.8
483,106 + Synpcc7942_0495 0.23 +0.2
483,114 - Synpcc7942_0495 0.25 -1.1
483,114 - +1.2
483,119 - +0.7
483,133 + Synpcc7942_0495 0.28 -0.4
483,148 + Synpcc7942_0495 0.31 -1.7
483,170 - Synpcc7942_0495 0.35 +1.4
483,170 - Synpcc7942_0495 0.35 +1.4
483,325 - Synpcc7942_0495 0.64 +0.1
483,435 - Synpcc7942_0495 0.85 -0.7

Or see this region's nucleotide sequence