Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0492

Experiment: No grazer plate rep 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0490 and Synpcc7942_0491 are separated by 259 nucleotidesSynpcc7942_0491 and ribF are separated by 39 nucleotidesribF and Synpcc7942_0493 are separated by 142 nucleotides Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440 _0490 Synpcc7942_0491: Synpcc7942_0491 - hypothetical protein, at 479,700 to 479,837 _0491 Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824 ribF Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451 _0493 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 479.032 kb on - strand, within Synpcc7942_0490at 479.116 kb on + strand, within Synpcc7942_0490at 479.116 kb on + strand, within Synpcc7942_0490at 479.123 kb on - strand, within Synpcc7942_0490at 479.125 kb on + strand, within Synpcc7942_0490at 479.185 kb on + strand, within Synpcc7942_0490at 479.185 kb on + strand, within Synpcc7942_0490at 479.185 kb on + strand, within Synpcc7942_0490at 479.193 kb on - strand, within Synpcc7942_0490at 479.220 kb on + strand, within Synpcc7942_0490at 479.220 kb on + strand, within Synpcc7942_0490at 479.271 kb on + strandat 479.312 kb on - strandat 479.346 kb on - strandat 479.392 kb on + strandat 479.473 kb on + strandat 479.473 kb on + strandat 479.620 kb on - strandat 479.655 kb on - strandat 479.658 kb on + strandat 479.666 kb on - strandat 479.737 kb on - strand, within Synpcc7942_0491at 479.737 kb on - strand, within Synpcc7942_0491at 479.737 kb on - strand, within Synpcc7942_0491at 479.737 kb on - strand, within Synpcc7942_0491at 479.762 kb on + strand, within Synpcc7942_0491at 479.770 kb on - strand, within Synpcc7942_0491at 479.781 kb on - strand, within Synpcc7942_0491at 479.788 kb on + strand, within Synpcc7942_0491at 479.804 kb on + strand, within Synpcc7942_0491at 479.811 kb on + strand, within Synpcc7942_0491at 479.820 kb on - strand, within Synpcc7942_0491at 479.832 kb on - strandat 479.849 kb on - strandat 479.899 kb on + strandat 480.839 kb on - strandat 480.848 kb on + strandat 480.853 kb on + strandat 480.853 kb on + strandat 480.861 kb on - strandat 480.862 kb on - strandat 480.862 kb on - strandat 480.862 kb on - strandat 480.887 kb on + strandat 480.887 kb on + strandat 480.887 kb on + strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.895 kb on - strandat 480.910 kb on - strandat 480.913 kb on + strandat 480.936 kb on + strandat 480.977 kb on + strandat 480.977 kb on + strandat 481.096 kb on - strandat 481.099 kb on + strandat 481.135 kb on + strand, within Synpcc7942_0493at 481.143 kb on - strand, within Synpcc7942_0493at 481.169 kb on + strand, within Synpcc7942_0493at 481.169 kb on + strand, within Synpcc7942_0493at 481.251 kb on + strand, within Synpcc7942_0493at 481.265 kb on - strand, within Synpcc7942_0493at 481.289 kb on - strand, within Synpcc7942_0493at 481.333 kb on + strand, within Synpcc7942_0493at 481.357 kb on - strand, within Synpcc7942_0493at 481.359 kb on + strand, within Synpcc7942_0493at 481.367 kb on - strand, within Synpcc7942_0493at 481.394 kb on + strand, within Synpcc7942_0493at 481.419 kb on - strand, within Synpcc7942_0493at 481.428 kb on - strand, within Synpcc7942_0493at 481.438 kb on - strand, within Synpcc7942_0493at 481.473 kb on + strand, within Synpcc7942_0493at 481.473 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.521 kb on + strand, within Synpcc7942_0493at 481.533 kb on - strand, within Synpcc7942_0493at 481.597 kb on - strand, within Synpcc7942_0493at 481.597 kb on - strand, within Synpcc7942_0493at 481.674 kb on + strand, within Synpcc7942_0493at 481.682 kb on - strand, within Synpcc7942_0493at 481.689 kb on + strand, within Synpcc7942_0493at 481.697 kb on - strand, within Synpcc7942_0493at 481.702 kb on - strand, within Synpcc7942_0493at 481.708 kb on - strand, within Synpcc7942_0493at 481.709 kb on - strand, within Synpcc7942_0493at 481.783 kb on - strand, within Synpcc7942_0493

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Per-strain Table

Position Strand Gene LocusTag Fraction No grazer plate rep 2
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479,032 - Synpcc7942_0490 0.80 -2.0
479,116 + Synpcc7942_0490 0.84 -0.2
479,116 + Synpcc7942_0490 0.84 +1.3
479,123 - Synpcc7942_0490 0.84 +0.3
479,125 + Synpcc7942_0490 0.85 +0.3
479,185 + Synpcc7942_0490 0.87 +1.5
479,185 + Synpcc7942_0490 0.87 +1.0
479,185 + Synpcc7942_0490 0.87 -1.9
479,193 - Synpcc7942_0490 0.88 +1.0
479,220 + Synpcc7942_0490 0.89 +1.0
479,220 + Synpcc7942_0490 0.89 -2.6
479,271 + -0.2
479,312 - -1.0
479,346 - -0.2
479,392 + -0.4
479,473 + -2.3
479,473 + -3.2
479,620 - +0.9
479,655 - +0.8
479,658 + -1.2
479,666 - -0.6
479,737 - Synpcc7942_0491 0.27 +1.8
479,737 - Synpcc7942_0491 0.27 +0.1
479,737 - Synpcc7942_0491 0.27 -1.3
479,737 - Synpcc7942_0491 0.27 -0.4
479,762 + Synpcc7942_0491 0.45 +0.0
479,770 - Synpcc7942_0491 0.51 -1.1
479,781 - Synpcc7942_0491 0.59 -0.6
479,788 + Synpcc7942_0491 0.64 +0.0
479,804 + Synpcc7942_0491 0.75 -1.7
479,811 + Synpcc7942_0491 0.80 +0.5
479,820 - Synpcc7942_0491 0.87 -0.2
479,832 - +0.6
479,849 - -0.7
479,899 + -0.1
480,839 - -1.8
480,848 + -0.5
480,853 + -0.1
480,853 + -0.8
480,861 - -1.7
480,862 - -1.8
480,862 - -0.2
480,862 - -1.1
480,887 + -0.3
480,887 + +1.2
480,887 + -0.6
480,895 - -1.7
480,895 - -1.1
480,895 - -1.9
480,895 - -1.6
480,895 - -0.9
480,910 - +0.4
480,913 + +1.5
480,936 + -0.6
480,977 + -0.3
480,977 + -0.9
481,096 - +3.8
481,099 + -1.5
481,135 + Synpcc7942_0493 0.11 -1.3
481,143 - Synpcc7942_0493 0.12 -0.8
481,169 + Synpcc7942_0493 0.14 -0.1
481,169 + Synpcc7942_0493 0.14 +0.0
481,251 + Synpcc7942_0493 0.19 -1.3
481,265 - Synpcc7942_0493 0.20 -1.2
481,289 - Synpcc7942_0493 0.22 +1.9
481,333 + Synpcc7942_0493 0.25 -1.5
481,357 - Synpcc7942_0493 0.26 -2.2
481,359 + Synpcc7942_0493 0.26 +0.2
481,367 - Synpcc7942_0493 0.27 -0.8
481,394 + Synpcc7942_0493 0.29 -1.2
481,419 - Synpcc7942_0493 0.30 -0.5
481,428 - Synpcc7942_0493 0.31 -1.0
481,438 - Synpcc7942_0493 0.32 -0.8
481,473 + Synpcc7942_0493 0.34 +2.1
481,473 + Synpcc7942_0493 0.34 -0.1
481,521 + Synpcc7942_0493 0.37 -0.3
481,521 + Synpcc7942_0493 0.37 -1.9
481,521 + Synpcc7942_0493 0.37 +0.5
481,521 + Synpcc7942_0493 0.37 +0.4
481,533 - Synpcc7942_0493 0.38 +3.4
481,597 - Synpcc7942_0493 0.42 -1.3
481,597 - Synpcc7942_0493 0.42 +0.4
481,674 + Synpcc7942_0493 0.48 +0.7
481,682 - Synpcc7942_0493 0.48 -0.1
481,689 + Synpcc7942_0493 0.49 +0.9
481,697 - Synpcc7942_0493 0.49 -1.8
481,702 - Synpcc7942_0493 0.49 -2.0
481,708 - Synpcc7942_0493 0.50 -0.4
481,709 - Synpcc7942_0493 0.50 -1.1
481,783 - Synpcc7942_0493 0.55 -0.1

Or see this region's nucleotide sequence