Experiment: No grazer plate rep 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aldA and Synpcc7942_0490 are separated by 350 nucleotides Synpcc7942_0490 and Synpcc7942_0491 are separated by 259 nucleotides Synpcc7942_0491 and ribF are separated by 39 nucleotides
Synpcc7942_0489: aldA - aldehyde dehydrogenase, at 475,665 to 477,044
aldA
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Synpcc7942_0491: Synpcc7942_0491 - hypothetical protein, at 479,700 to 479,837
_0491
Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824
ribF
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.399 kb on + strand, within aldA at 476.421 kb on + strand, within aldA at 476.478 kb on + strand, within aldA at 476.495 kb on + strand, within aldA at 476.498 kb on - strand, within aldA at 476.507 kb on - strand, within aldA at 476.541 kb on + strand, within aldA at 476.601 kb on + strand, within aldA at 476.614 kb on + strand, within aldA at 476.622 kb on - strand, within aldA at 476.637 kb on - strand, within aldA at 476.670 kb on - strand, within aldA at 476.672 kb on + strand, within aldA at 476.680 kb on + strand, within aldA at 476.685 kb on + strand, within aldA at 476.688 kb on - strand, within aldA at 476.692 kb on + strand, within aldA at 476.701 kb on - strand, within aldA at 476.710 kb on + strand, within aldA at 476.718 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.730 kb on + strand, within aldA at 476.811 kb on - strand, within aldA at 476.833 kb on + strand, within aldA at 476.841 kb on - strand, within aldA at 476.847 kb on + strand, within aldA at 476.855 kb on - strand, within aldA at 476.874 kb on - strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.897 kb on - strand, within aldA at 476.935 kb on + strand at 476.951 kb on + strand at 476.959 kb on - strand at 476.989 kb on - strand at 477.040 kb on - strand at 477.047 kb on - strand at 477.050 kb on - strand at 477.208 kb on + strand at 477.236 kb on + strand at 477.255 kb on + strand at 477.256 kb on - strand at 477.260 kb on + strand at 477.263 kb on - strand at 477.263 kb on - strand at 477.278 kb on - strand at 477.278 kb on - strand at 477.302 kb on + strand at 477.529 kb on + strand at 477.844 kb on - strand, within Synpcc7942_0490 at 477.882 kb on + strand, within Synpcc7942_0490 at 477.915 kb on + strand, within Synpcc7942_0490 at 478.057 kb on + strand, within Synpcc7942_0490 at 478.057 kb on - strand, within Synpcc7942_0490 at 478.065 kb on - strand, within Synpcc7942_0490 at 478.072 kb on + strand, within Synpcc7942_0490 at 478.080 kb on - strand, within Synpcc7942_0490 at 478.161 kb on - strand, within Synpcc7942_0490 at 478.219 kb on + strand, within Synpcc7942_0490 at 478.249 kb on + strand, within Synpcc7942_0490 at 478.303 kb on - strand, within Synpcc7942_0490 at 478.310 kb on - strand, within Synpcc7942_0490 at 478.360 kb on + strand, within Synpcc7942_0490 at 478.477 kb on + strand, within Synpcc7942_0490 at 478.477 kb on + strand, within Synpcc7942_0490 at 478.479 kb on + strand, within Synpcc7942_0490 at 478.485 kb on - strand, within Synpcc7942_0490 at 478.487 kb on - strand, within Synpcc7942_0490 at 478.507 kb on + strand, within Synpcc7942_0490 at 478.517 kb on + strand, within Synpcc7942_0490 at 478.525 kb on - strand, within Synpcc7942_0490 at 478.541 kb on - strand, within Synpcc7942_0490 at 478.564 kb on + strand, within Synpcc7942_0490 at 478.757 kb on - strand, within Synpcc7942_0490 at 478.769 kb on + strand, within Synpcc7942_0490 at 479.032 kb on - strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.123 kb on - strand, within Synpcc7942_0490 at 479.125 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.193 kb on - strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.271 kb on + strand at 479.312 kb on - strand at 479.346 kb on - strand at 479.392 kb on + strand at 479.473 kb on + strand at 479.473 kb on + strand at 479.620 kb on - strand at 479.655 kb on - strand at 479.658 kb on + strand at 479.666 kb on - strand at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.762 kb on + strand, within Synpcc7942_0491 at 479.770 kb on - strand, within Synpcc7942_0491 at 479.781 kb on - strand, within Synpcc7942_0491 at 479.788 kb on + strand, within Synpcc7942_0491 at 479.804 kb on + strand, within Synpcc7942_0491 at 479.811 kb on + strand, within Synpcc7942_0491 at 479.820 kb on - strand, within Synpcc7942_0491 at 479.832 kb on - strand at 479.849 kb on - strand at 479.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 2 remove 476,399 + aldA Synpcc7942_0489 0.53 +0.7 476,421 + aldA Synpcc7942_0489 0.55 +0.7 476,478 + aldA Synpcc7942_0489 0.59 -0.6 476,495 + aldA Synpcc7942_0489 0.60 +0.4 476,498 - aldA Synpcc7942_0489 0.60 +0.8 476,507 - aldA Synpcc7942_0489 0.61 +1.8 476,541 + aldA Synpcc7942_0489 0.63 +0.1 476,601 + aldA Synpcc7942_0489 0.68 +1.4 476,614 + aldA Synpcc7942_0489 0.69 -0.4 476,622 - aldA Synpcc7942_0489 0.69 +0.3 476,637 - aldA Synpcc7942_0489 0.70 -0.5 476,670 - aldA Synpcc7942_0489 0.73 +1.5 476,672 + aldA Synpcc7942_0489 0.73 -0.7 476,680 + aldA Synpcc7942_0489 0.74 -1.1 476,685 + aldA Synpcc7942_0489 0.74 +0.6 476,688 - aldA Synpcc7942_0489 0.74 -1.8 476,692 + aldA Synpcc7942_0489 0.74 -1.4 476,701 - aldA Synpcc7942_0489 0.75 -0.1 476,710 + aldA Synpcc7942_0489 0.76 -0.7 476,718 - aldA Synpcc7942_0489 0.76 +1.8 476,728 - aldA Synpcc7942_0489 0.77 +0.7 476,728 - aldA Synpcc7942_0489 0.77 +0.3 476,730 + aldA Synpcc7942_0489 0.77 -1.2 476,811 - aldA Synpcc7942_0489 0.83 +0.8 476,833 + aldA Synpcc7942_0489 0.85 +0.7 476,841 - aldA Synpcc7942_0489 0.85 +0.5 476,847 + aldA Synpcc7942_0489 0.86 -0.2 476,855 - aldA Synpcc7942_0489 0.86 +0.5 476,874 - aldA Synpcc7942_0489 0.88 -0.5 476,876 + aldA Synpcc7942_0489 0.88 +0.5 476,876 + aldA Synpcc7942_0489 0.88 -2.3 476,876 + aldA Synpcc7942_0489 0.88 -1.8 476,897 - aldA Synpcc7942_0489 0.89 -0.5 476,935 + -1.3 476,951 + -1.0 476,959 - -0.1 476,989 - -1.0 477,040 - -1.1 477,047 - -0.9 477,050 - -0.1 477,208 + +0.8 477,236 + +2.0 477,255 + -0.7 477,256 - -0.6 477,260 + +0.4 477,263 - -0.8 477,263 - +1.3 477,278 - +1.5 477,278 - -1.0 477,302 + +1.5 477,529 + -0.9 477,844 - Synpcc7942_0490 0.22 +0.0 477,882 + Synpcc7942_0490 0.24 +0.7 477,915 + Synpcc7942_0490 0.25 +0.5 478,057 + Synpcc7942_0490 0.32 +0.4 478,057 - Synpcc7942_0490 0.32 -2.1 478,065 - Synpcc7942_0490 0.33 -0.8 478,072 + Synpcc7942_0490 0.33 -0.1 478,080 - Synpcc7942_0490 0.33 +0.1 478,161 - Synpcc7942_0490 0.37 -0.7 478,219 + Synpcc7942_0490 0.40 +0.3 478,249 + Synpcc7942_0490 0.42 -1.0 478,303 - Synpcc7942_0490 0.44 +0.4 478,310 - Synpcc7942_0490 0.45 +0.1 478,360 + Synpcc7942_0490 0.47 +0.2 478,477 + Synpcc7942_0490 0.53 -2.8 478,477 + Synpcc7942_0490 0.53 -0.8 478,479 + Synpcc7942_0490 0.53 +1.8 478,485 - Synpcc7942_0490 0.53 -0.6 478,487 - Synpcc7942_0490 0.53 +0.7 478,507 + Synpcc7942_0490 0.54 -2.9 478,517 + Synpcc7942_0490 0.55 -0.9 478,525 - Synpcc7942_0490 0.55 -1.3 478,541 - Synpcc7942_0490 0.56 -3.4 478,564 + Synpcc7942_0490 0.57 -1.3 478,757 - Synpcc7942_0490 0.67 +0.2 478,769 + Synpcc7942_0490 0.67 +1.3 479,032 - Synpcc7942_0490 0.80 -2.0 479,116 + Synpcc7942_0490 0.84 -0.2 479,116 + Synpcc7942_0490 0.84 +1.3 479,123 - Synpcc7942_0490 0.84 +0.3 479,125 + Synpcc7942_0490 0.85 +0.3 479,185 + Synpcc7942_0490 0.87 +1.5 479,185 + Synpcc7942_0490 0.87 +1.0 479,185 + Synpcc7942_0490 0.87 -1.9 479,193 - Synpcc7942_0490 0.88 +1.0 479,220 + Synpcc7942_0490 0.89 +1.0 479,220 + Synpcc7942_0490 0.89 -2.6 479,271 + -0.2 479,312 - -1.0 479,346 - -0.2 479,392 + -0.4 479,473 + -2.3 479,473 + -3.2 479,620 - +0.9 479,655 - +0.8 479,658 + -1.2 479,666 - -0.6 479,737 - Synpcc7942_0491 0.27 +1.8 479,737 - Synpcc7942_0491 0.27 +0.1 479,737 - Synpcc7942_0491 0.27 -1.3 479,737 - Synpcc7942_0491 0.27 -0.4 479,762 + Synpcc7942_0491 0.45 +0.0 479,770 - Synpcc7942_0491 0.51 -1.1 479,781 - Synpcc7942_0491 0.59 -0.6 479,788 + Synpcc7942_0491 0.64 +0.0 479,804 + Synpcc7942_0491 0.75 -1.7 479,811 + Synpcc7942_0491 0.80 +0.5 479,820 - Synpcc7942_0491 0.87 -0.2 479,832 - +0.6 479,849 - -0.7 479,899 + -0.1
Or see this region's nucleotide sequence