Experiment: No grazer plate rep 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gyrA and Synpcc7942_0255 are separated by 73 nucleotides Synpcc7942_0255 and ama are separated by 89 nucleotides
Synpcc7942_0254: gyrA - DNA gyrase subunit A, at 248,859 to 251,429
gyrA
Synpcc7942_0255: Synpcc7942_0255 - ATPase, at 251,503 to 252,783
_0255
Synpcc7942_0256: ama - Peptidase M20D, amidohydrolase, at 252,873 to 254,099
ama
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.446 kb on + strand at 251.477 kb on + strand at 251.485 kb on - strand at 251.510 kb on + strand at 251.510 kb on + strand at 251.511 kb on + strand at 251.518 kb on - strand at 251.524 kb on - strand at 251.526 kb on + strand at 251.529 kb on - strand at 251.542 kb on + strand at 251.674 kb on + strand, within Synpcc7942_0255 at 251.680 kb on + strand, within Synpcc7942_0255 at 251.688 kb on - strand, within Synpcc7942_0255 at 251.694 kb on + strand, within Synpcc7942_0255 at 251.707 kb on + strand, within Synpcc7942_0255 at 251.715 kb on - strand, within Synpcc7942_0255 at 251.755 kb on - strand, within Synpcc7942_0255 at 251.796 kb on + strand, within Synpcc7942_0255 at 251.804 kb on - strand, within Synpcc7942_0255 at 251.844 kb on - strand, within Synpcc7942_0255 at 251.857 kb on - strand, within Synpcc7942_0255 at 251.883 kb on + strand, within Synpcc7942_0255 at 251.891 kb on - strand, within Synpcc7942_0255 at 251.891 kb on - strand, within Synpcc7942_0255 at 251.905 kb on - strand, within Synpcc7942_0255 at 252.008 kb on + strand, within Synpcc7942_0255 at 252.016 kb on - strand, within Synpcc7942_0255 at 252.016 kb on - strand, within Synpcc7942_0255 at 252.017 kb on + strand, within Synpcc7942_0255 at 252.050 kb on + strand, within Synpcc7942_0255 at 252.055 kb on + strand, within Synpcc7942_0255 at 252.058 kb on - strand, within Synpcc7942_0255 at 252.062 kb on + strand, within Synpcc7942_0255 at 252.062 kb on + strand, within Synpcc7942_0255 at 252.063 kb on - strand, within Synpcc7942_0255 at 252.175 kb on + strand, within Synpcc7942_0255 at 252.216 kb on + strand, within Synpcc7942_0255 at 252.216 kb on + strand, within Synpcc7942_0255 at 252.216 kb on + strand, within Synpcc7942_0255 at 252.223 kb on + strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.247 kb on + strand, within Synpcc7942_0255 at 252.254 kb on + strand, within Synpcc7942_0255 at 252.254 kb on + strand, within Synpcc7942_0255 at 252.254 kb on + strand, within Synpcc7942_0255 at 252.262 kb on - strand, within Synpcc7942_0255 at 252.262 kb on - strand, within Synpcc7942_0255 at 252.289 kb on - strand, within Synpcc7942_0255 at 252.296 kb on - strand, within Synpcc7942_0255 at 252.309 kb on - strand, within Synpcc7942_0255 at 252.311 kb on + strand, within Synpcc7942_0255 at 252.323 kb on + strand, within Synpcc7942_0255 at 252.372 kb on - strand, within Synpcc7942_0255 at 252.377 kb on - strand, within Synpcc7942_0255 at 252.377 kb on - strand, within Synpcc7942_0255 at 252.389 kb on + strand, within Synpcc7942_0255 at 252.409 kb on + strand, within Synpcc7942_0255 at 252.432 kb on + strand, within Synpcc7942_0255 at 252.443 kb on + strand, within Synpcc7942_0255 at 252.446 kb on - strand, within Synpcc7942_0255 at 252.463 kb on + strand, within Synpcc7942_0255 at 252.509 kb on - strand, within Synpcc7942_0255 at 252.556 kb on + strand, within Synpcc7942_0255 at 252.578 kb on - strand, within Synpcc7942_0255 at 252.578 kb on - strand, within Synpcc7942_0255 at 252.578 kb on - strand, within Synpcc7942_0255 at 252.610 kb on - strand, within Synpcc7942_0255 at 252.610 kb on - strand, within Synpcc7942_0255 at 252.623 kb on + strand, within Synpcc7942_0255 at 252.631 kb on - strand, within Synpcc7942_0255 at 252.633 kb on - strand at 252.633 kb on - strand, within Synpcc7942_0255 at 252.633 kb on - strand, within Synpcc7942_0255 at 252.634 kb on - strand, within Synpcc7942_0255 at 252.706 kb on + strand at 252.706 kb on + strand at 252.766 kb on + strand at 252.811 kb on + strand at 252.811 kb on + strand at 252.824 kb on - strand at 252.835 kb on + strand at 252.865 kb on + strand at 252.883 kb on + strand at 252.884 kb on - strand at 252.885 kb on - strand at 252.886 kb on - strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.898 kb on + strand at 252.915 kb on + strand at 252.915 kb on + strand at 252.923 kb on - strand at 252.970 kb on + strand at 253.000 kb on + strand, within ama at 253.008 kb on - strand, within ama at 253.012 kb on + strand, within ama at 253.028 kb on - strand, within ama at 253.112 kb on + strand, within ama at 253.374 kb on + strand, within ama at 253.382 kb on - strand, within ama at 253.382 kb on - strand, within ama at 253.408 kb on + strand, within ama at 253.416 kb on - strand, within ama at 253.446 kb on + strand, within ama at 253.464 kb on - strand, within ama at 253.474 kb on - strand, within ama at 253.491 kb on - strand, within ama at 253.558 kb on + strand, within ama at 253.558 kb on - strand, within ama at 253.575 kb on - strand, within ama at 253.585 kb on + strand, within ama at 253.585 kb on + strand, within ama at 253.593 kb on - strand, within ama at 253.601 kb on + strand, within ama at 253.613 kb on + strand, within ama at 253.614 kb on - strand, within ama at 253.618 kb on + strand, within ama at 253.618 kb on - strand, within ama at 253.621 kb on - strand, within ama at 253.623 kb on - strand, within ama at 253.633 kb on - strand, within ama at 253.650 kb on + strand, within ama at 253.656 kb on + strand, within ama at 253.664 kb on - strand, within ama at 253.664 kb on - strand, within ama at 253.686 kb on + strand, within ama at 253.706 kb on - strand, within ama
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 2 remove 251,446 + +0.8 251,477 + -2.1 251,485 - -2.5 251,510 + +0.0 251,510 + -0.1 251,511 + +0.1 251,518 - -1.9 251,524 - +0.3 251,526 + +1.0 251,529 - +0.3 251,542 + +1.3 251,674 + Synpcc7942_0255 0.13 -0.7 251,680 + Synpcc7942_0255 0.14 +0.0 251,688 - Synpcc7942_0255 0.14 -1.3 251,694 + Synpcc7942_0255 0.15 +1.5 251,707 + Synpcc7942_0255 0.16 -2.9 251,715 - Synpcc7942_0255 0.17 -0.7 251,755 - Synpcc7942_0255 0.20 -0.4 251,796 + Synpcc7942_0255 0.23 -0.0 251,804 - Synpcc7942_0255 0.23 -0.2 251,844 - Synpcc7942_0255 0.27 -2.1 251,857 - Synpcc7942_0255 0.28 +0.8 251,883 + Synpcc7942_0255 0.30 -0.2 251,891 - Synpcc7942_0255 0.30 -2.0 251,891 - Synpcc7942_0255 0.30 -0.5 251,905 - Synpcc7942_0255 0.31 +0.0 252,008 + Synpcc7942_0255 0.39 +0.7 252,016 - Synpcc7942_0255 0.40 -0.1 252,016 - Synpcc7942_0255 0.40 -1.1 252,017 + Synpcc7942_0255 0.40 -0.7 252,050 + Synpcc7942_0255 0.43 -0.3 252,055 + Synpcc7942_0255 0.43 -0.0 252,058 - Synpcc7942_0255 0.43 +1.3 252,062 + Synpcc7942_0255 0.44 +1.5 252,062 + Synpcc7942_0255 0.44 -1.6 252,063 - Synpcc7942_0255 0.44 -0.0 252,175 + Synpcc7942_0255 0.52 +0.6 252,216 + Synpcc7942_0255 0.56 -1.2 252,216 + Synpcc7942_0255 0.56 -1.9 252,216 + Synpcc7942_0255 0.56 +1.3 252,223 + Synpcc7942_0255 0.56 -1.5 252,224 - Synpcc7942_0255 0.56 -0.2 252,224 - Synpcc7942_0255 0.56 -0.5 252,224 - Synpcc7942_0255 0.56 -2.0 252,224 - Synpcc7942_0255 0.56 -1.7 252,247 + Synpcc7942_0255 0.58 +1.0 252,254 + Synpcc7942_0255 0.59 -0.8 252,254 + Synpcc7942_0255 0.59 +0.1 252,254 + Synpcc7942_0255 0.59 +0.9 252,262 - Synpcc7942_0255 0.59 -0.2 252,262 - Synpcc7942_0255 0.59 +0.8 252,289 - Synpcc7942_0255 0.61 -2.2 252,296 - Synpcc7942_0255 0.62 -1.3 252,309 - Synpcc7942_0255 0.63 -1.1 252,311 + Synpcc7942_0255 0.63 +0.3 252,323 + Synpcc7942_0255 0.64 -0.0 252,372 - Synpcc7942_0255 0.68 -2.0 252,377 - Synpcc7942_0255 0.68 +0.4 252,377 - Synpcc7942_0255 0.68 -0.1 252,389 + Synpcc7942_0255 0.69 -1.2 252,409 + Synpcc7942_0255 0.71 -1.3 252,432 + Synpcc7942_0255 0.73 -0.1 252,443 + Synpcc7942_0255 0.73 +0.0 252,446 - Synpcc7942_0255 0.74 +0.9 252,463 + Synpcc7942_0255 0.75 +0.4 252,509 - Synpcc7942_0255 0.79 +0.8 252,556 + Synpcc7942_0255 0.82 -1.6 252,578 - Synpcc7942_0255 0.84 -1.2 252,578 - Synpcc7942_0255 0.84 -0.6 252,578 - Synpcc7942_0255 0.84 -1.7 252,610 - Synpcc7942_0255 0.86 -0.2 252,610 - Synpcc7942_0255 0.86 -0.8 252,623 + Synpcc7942_0255 0.87 -0.5 252,631 - Synpcc7942_0255 0.88 +0.8 252,633 - +2.5 252,633 - Synpcc7942_0255 0.88 +1.1 252,633 - Synpcc7942_0255 0.88 -0.6 252,634 - Synpcc7942_0255 0.88 +0.8 252,706 + -0.5 252,706 + -1.8 252,766 + -0.1 252,811 + -2.5 252,811 + -0.2 252,824 - +0.4 252,835 + +0.0 252,865 + -0.8 252,883 + -0.2 252,884 - +0.1 252,885 - -0.1 252,886 - -0.6 252,891 - -0.2 252,891 - -1.0 252,898 + -0.3 252,915 + -0.1 252,915 + -1.3 252,923 - -0.9 252,970 + +3.3 253,000 + ama Synpcc7942_0256 0.10 +0.5 253,008 - ama Synpcc7942_0256 0.11 -1.1 253,012 + ama Synpcc7942_0256 0.11 -1.6 253,028 - ama Synpcc7942_0256 0.13 -0.7 253,112 + ama Synpcc7942_0256 0.19 -0.1 253,374 + ama Synpcc7942_0256 0.41 -0.4 253,382 - ama Synpcc7942_0256 0.41 +0.8 253,382 - ama Synpcc7942_0256 0.41 +0.2 253,408 + ama Synpcc7942_0256 0.44 -0.6 253,416 - ama Synpcc7942_0256 0.44 -1.2 253,446 + ama Synpcc7942_0256 0.47 -3.1 253,464 - ama Synpcc7942_0256 0.48 -1.0 253,474 - ama Synpcc7942_0256 0.49 -1.4 253,491 - ama Synpcc7942_0256 0.50 +0.4 253,558 + ama Synpcc7942_0256 0.56 -0.4 253,558 - ama Synpcc7942_0256 0.56 -0.9 253,575 - ama Synpcc7942_0256 0.57 +2.0 253,585 + ama Synpcc7942_0256 0.58 +0.1 253,585 + ama Synpcc7942_0256 0.58 +0.0 253,593 - ama Synpcc7942_0256 0.59 -0.6 253,601 + ama Synpcc7942_0256 0.59 -1.0 253,613 + ama Synpcc7942_0256 0.60 -0.1 253,614 - ama Synpcc7942_0256 0.60 +1.5 253,618 + ama Synpcc7942_0256 0.61 -1.4 253,618 - ama Synpcc7942_0256 0.61 -0.7 253,621 - ama Synpcc7942_0256 0.61 +0.8 253,623 - ama Synpcc7942_0256 0.61 -0.2 253,633 - ama Synpcc7942_0256 0.62 +0.1 253,650 + ama Synpcc7942_0256 0.63 -0.9 253,656 + ama Synpcc7942_0256 0.64 -1.1 253,664 - ama Synpcc7942_0256 0.64 +0.7 253,664 - ama Synpcc7942_0256 0.64 -0.7 253,686 + ama Synpcc7942_0256 0.66 -0.4 253,706 - ama Synpcc7942_0256 0.68 +0.5
Or see this region's nucleotide sequence