Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2195

Experiment: MoYLS4 media with NH4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2194 and DvMF_2195 overlap by 4 nucleotidesDvMF_2195 and DvMF_2196 are separated by 184 nucleotides DvMF_2194: DvMF_2194 - permease (RefSeq), at 2,740,607 to 2,741,704 _2194 DvMF_2195: DvMF_2195 - hypothetical protein (RefSeq), at 2,741,701 to 2,742,951 _2195 DvMF_2196: DvMF_2196 - FAD linked oxidase domain protein (RefSeq), at 2,743,136 to 2,745,964 _2196 Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -1 0 1at 2740.793 kb on + strand, within DvMF_2194at 2740.801 kb on - strand, within DvMF_2194at 2740.823 kb on - strand, within DvMF_2194at 2740.973 kb on + strand, within DvMF_2194at 2741.199 kb on - strand, within DvMF_2194at 2741.264 kb on - strand, within DvMF_2194at 2741.282 kb on + strand, within DvMF_2194at 2741.394 kb on + strand, within DvMF_2194at 2741.394 kb on + strand, within DvMF_2194at 2741.402 kb on - strand, within DvMF_2194at 2741.402 kb on - strand, within DvMF_2194at 2741.402 kb on - strand, within DvMF_2194at 2741.402 kb on - strand, within DvMF_2194at 2741.451 kb on - strand, within DvMF_2194at 2741.543 kb on + strand, within DvMF_2194at 2741.570 kb on + strand, within DvMF_2194at 2741.693 kb on - strandat 2741.763 kb on + strandat 2741.771 kb on - strandat 2742.009 kb on + strand, within DvMF_2195at 2742.397 kb on + strand, within DvMF_2195at 2742.769 kb on + strand, within DvMF_2195at 2742.769 kb on - strand, within DvMF_2195at 2742.815 kb on + strand, within DvMF_2195at 2742.823 kb on - strand, within DvMF_2195at 2742.975 kb on + strandat 2743.030 kb on - strandat 2743.308 kb on - strandat 2743.687 kb on - strand, within DvMF_2196at 2743.728 kb on - strand, within DvMF_2196at 2743.901 kb on - strand, within DvMF_2196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4
remove
2,740,793 + DvMF_2194 0.17 -0.2
2,740,801 - DvMF_2194 0.18 -0.5
2,740,823 - DvMF_2194 0.20 -0.0
2,740,973 + DvMF_2194 0.33 -0.5
2,741,199 - DvMF_2194 0.54 -0.7
2,741,264 - DvMF_2194 0.60 +0.2
2,741,282 + DvMF_2194 0.61 -0.1
2,741,394 + DvMF_2194 0.72 -0.6
2,741,394 + DvMF_2194 0.72 -0.5
2,741,402 - DvMF_2194 0.72 -0.7
2,741,402 - DvMF_2194 0.72 +0.5
2,741,402 - DvMF_2194 0.72 -0.1
2,741,402 - DvMF_2194 0.72 -0.4
2,741,451 - DvMF_2194 0.77 +0.0
2,741,543 + DvMF_2194 0.85 -0.3
2,741,570 + DvMF_2194 0.88 +0.1
2,741,693 - -0.4
2,741,763 + +0.1
2,741,771 - -0.4
2,742,009 + DvMF_2195 0.25 -0.2
2,742,397 + DvMF_2195 0.56 -0.3
2,742,769 + DvMF_2195 0.85 -1.6
2,742,769 - DvMF_2195 0.85 -0.3
2,742,815 + DvMF_2195 0.89 -0.9
2,742,823 - DvMF_2195 0.90 +0.3
2,742,975 + -0.2
2,743,030 - +0.9
2,743,308 - -0.5
2,743,687 - DvMF_2196 0.19 -0.4
2,743,728 - DvMF_2196 0.21 +0.1
2,743,901 - DvMF_2196 0.27 -0.4

Or see this region's nucleotide sequence