Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1537

Experiment: MoYLS4 media with NH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1536 and DvMF_1537 are separated by 915 nucleotidesDvMF_1537 and DvMF_1538 are separated by 123 nucleotides DvMF_1536: DvMF_1536 - arginine decarboxylase (RefSeq), at 1,893,516 to 1,895,453 _1536 DvMF_1537: DvMF_1537 - diguanylate cyclase (RefSeq), at 1,896,369 to 1,897,514 _1537 DvMF_1538: DvMF_1538 - Leucyl aminopeptidase (RefSeq), at 1,897,638 to 1,899,203 _1538 Position (kb) 1896 1897 1898Strain fitness (log2 ratio) -1 0 1at 1895.377 kb on + strandat 1895.537 kb on + strandat 1895.537 kb on + strandat 1895.537 kb on + strandat 1895.545 kb on - strandat 1896.216 kb on + strandat 1896.323 kb on - strandat 1896.440 kb on + strandat 1896.476 kb on + strandat 1896.552 kb on - strand, within DvMF_1537at 1896.552 kb on - strand, within DvMF_1537at 1896.593 kb on + strand, within DvMF_1537at 1896.685 kb on + strand, within DvMF_1537at 1896.711 kb on - strand, within DvMF_1537at 1897.296 kb on - strand, within DvMF_1537at 1897.296 kb on - strand, within DvMF_1537at 1897.341 kb on - strand, within DvMF_1537at 1897.351 kb on - strand, within DvMF_1537at 1897.493 kb on - strandat 1897.723 kb on + strandat 1897.765 kb on + strandat 1898.051 kb on + strand, within DvMF_1538at 1898.053 kb on + strand, within DvMF_1538at 1898.058 kb on + strand, within DvMF_1538at 1898.066 kb on - strand, within DvMF_1538at 1898.251 kb on - strand, within DvMF_1538

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4
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1,895,377 + -0.8
1,895,537 + -0.6
1,895,537 + -0.3
1,895,537 + -0.5
1,895,545 - +0.4
1,896,216 + +0.3
1,896,323 - -0.6
1,896,440 + -1.1
1,896,476 + -0.9
1,896,552 - DvMF_1537 0.16 -1.5
1,896,552 - DvMF_1537 0.16 -1.0
1,896,593 + DvMF_1537 0.20 -0.6
1,896,685 + DvMF_1537 0.28 -0.7
1,896,711 - DvMF_1537 0.30 +0.3
1,897,296 - DvMF_1537 0.81 -1.3
1,897,296 - DvMF_1537 0.81 -0.6
1,897,341 - DvMF_1537 0.85 -0.7
1,897,351 - DvMF_1537 0.86 +0.2
1,897,493 - -0.2
1,897,723 + +0.0
1,897,765 + +1.2
1,898,051 + DvMF_1538 0.26 -0.8
1,898,053 + DvMF_1538 0.27 +0.2
1,898,058 + DvMF_1538 0.27 +0.7
1,898,066 - DvMF_1538 0.27 -0.5
1,898,251 - DvMF_1538 0.39 +0.4

Or see this region's nucleotide sequence