Experiment: MoYLS4 media with NH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1220 and DvMF_1221 are separated by 429 nucleotides DvMF_1221 and DvMF_1222 overlap by 4 nucleotides
DvMF_1220: DvMF_1220 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,503,023 to 1,503,805
_1220
DvMF_1221: DvMF_1221 - Extracellular ligand-binding receptor (RefSeq), at 1,504,235 to 1,505,653
_1221
DvMF_1222: DvMF_1222 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,505,650 to 1,507,710
_1222
Position (kb)
1504
1505
1506 Strain fitness (log2 ratio)
-1
0
1 at 1503.406 kb on - strand, within DvMF_1220 at 1503.485 kb on - strand, within DvMF_1220 at 1503.623 kb on - strand, within DvMF_1220 at 1503.813 kb on + strand at 1503.813 kb on + strand at 1503.999 kb on + strand at 1504.018 kb on + strand at 1504.018 kb on + strand at 1504.026 kb on - strand at 1504.026 kb on - strand at 1504.446 kb on + strand, within DvMF_1221 at 1504.793 kb on + strand, within DvMF_1221 at 1504.952 kb on - strand, within DvMF_1221 at 1504.977 kb on - strand, within DvMF_1221 at 1505.095 kb on - strand, within DvMF_1221 at 1505.097 kb on - strand, within DvMF_1221 at 1505.322 kb on - strand, within DvMF_1221 at 1505.440 kb on - strand, within DvMF_1221 at 1505.845 kb on - strand at 1505.959 kb on + strand, within DvMF_1222 at 1506.037 kb on + strand, within DvMF_1222 at 1506.094 kb on + strand, within DvMF_1222 at 1506.237 kb on + strand, within DvMF_1222 at 1506.245 kb on - strand, within DvMF_1222 at 1506.438 kb on + strand, within DvMF_1222 at 1506.443 kb on - strand, within DvMF_1222 at 1506.525 kb on - strand, within DvMF_1222 at 1506.570 kb on - strand, within DvMF_1222 at 1506.598 kb on - strand, within DvMF_1222
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 remove 1,503,406 - DvMF_1220 0.49 -0.1 1,503,485 - DvMF_1220 0.59 -0.2 1,503,623 - DvMF_1220 0.77 -0.1 1,503,813 + -0.9 1,503,813 + -1.1 1,503,999 + -0.2 1,504,018 + +0.8 1,504,018 + -0.6 1,504,026 - +0.0 1,504,026 - +0.1 1,504,446 + DvMF_1221 0.15 -0.8 1,504,793 + DvMF_1221 0.39 -0.1 1,504,952 - DvMF_1221 0.51 -0.3 1,504,977 - DvMF_1221 0.52 +0.9 1,505,095 - DvMF_1221 0.61 -0.6 1,505,097 - DvMF_1221 0.61 -0.3 1,505,322 - DvMF_1221 0.77 +0.3 1,505,440 - DvMF_1221 0.85 -0.0 1,505,845 - -0.2 1,505,959 + DvMF_1222 0.15 -0.6 1,506,037 + DvMF_1222 0.19 +0.2 1,506,094 + DvMF_1222 0.22 -0.4 1,506,237 + DvMF_1222 0.28 -0.4 1,506,245 - DvMF_1222 0.29 -0.4 1,506,438 + DvMF_1222 0.38 -0.3 1,506,443 - DvMF_1222 0.38 -0.6 1,506,525 - DvMF_1222 0.42 -0.5 1,506,570 - DvMF_1222 0.45 -0.7 1,506,598 - DvMF_1222 0.46 -0.7
Or see this region's nucleotide sequence